RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 XXYLT1Q8NBI6 393 aa16.68■□□□□ 0.26
HMGA1-202ENST00000347617 DDX27Q96GQ7 796 aaKnown RBP16.68■□□□□ 0.26
HMGA1-202ENST00000347617 OLFM3Q96PB7 478 aa16.68■□□□□ 0.26
HMGA1-202ENST00000347617 ZNF184Q99676 751 aaPredicted RBP16.68■□□□□ 0.26
HMGA1-202ENST00000347617 JPH1Q9HDC5 661 aaPredicted RBP16.68■□□□□ 0.26
HMGA1-202ENST00000347617 SAYSD1Q9NPB0 183 aa16.68■□□□□ 0.26
HMGA1-202ENST00000347617 SLCO1B3Q9NPD5 702 aa16.68■□□□□ 0.26
HMGA1-202ENST00000347617 PKD2L1Q9P0L9 805 aa16.68■□□□□ 0.26
HMGA1-202ENST00000347617 ANAPC7Q9UJX3 599 aa16.68■□□□□ 0.26
HMGA1-202ENST00000347617 ATMINO43313 823 aaPredicted RBP16.67■□□□□ 0.26
HMGA1-202ENST00000347617 MAGEC1O60732 1142 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 ATP5BP06576 529 aaKnown RBP16.67■□□□□ 0.26
HMGA1-202ENST00000347617 TSHRP16473 764 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 ADSSP30520 456 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 PHBP35232 272 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 RAP1GDS1P52306 607 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 GTF2A2P52657 109 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 PPP3CAQ08209 521 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 EFHC2Q5JST6 749 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 C6orf163Q5TEZ5 329 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 ABHD15Q6UXT9 468 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 SEPT14Q6ZU15 432 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 RHOT1Q8IXI2 618 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 VPS52Q8N1B4 723 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 EXD1Q8NHP7 514 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 DHX38Q92620 1227 aaKnown RBP16.67■□□□□ 0.26
HMGA1-202ENST00000347617 MIPEPQ99797 713 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 OSBPL8Q9BZF1 889 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 C17orf75Q9HAS0 396 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 COQ4Q9Y3A0 265 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 UMODL1Q5DID0 1318 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 LCTP09848 1927 aa16.67■□□□□ 0.26
HMGA1-202ENST00000347617 DNAJC25-GNG10A0A024R161 153 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 CAPN9O14815 690 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 ALOX15BO15296 676 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 CYP26A1O43174 497 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 PROSCO94903 275 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 PLS3P13797 630 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 RPA3P35244 121 aaPredicted RBP16.66■□□□□ 0.26
HMGA1-202ENST00000347617 GJA5P36382 358 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 PKN2Q16513 984 aaKnown RBP16.66■□□□□ 0.26
HMGA1-202ENST00000347617 LVRNQ6Q4G3 990 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 MTDHQ86UE4 582 aaKnown RBP16.66■□□□□ 0.26
HMGA1-202ENST00000347617 ZC3H18Q86VM9 953 aaKnown RBP16.66■□□□□ 0.26
HMGA1-202ENST00000347617 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.66■□□□□ 0.26
HMGA1-202ENST00000347617 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.66■□□□□ 0.26
HMGA1-202ENST00000347617 ATG4AQ8WYN0 398 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 AZIN2Q96A70 460 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 BTBD6Q96KE9 485 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 CENPKQ9BS16 269 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 DNAJC17Q9NVM6 304 aaKnown RBP16.66■□□□□ 0.26
HMGA1-202ENST00000347617 POLIQ9UNA4 740 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 SHOC2Q9UQ13 582 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 SOWAHBA6NEL2 793 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 FOXO6A8MYZ6 492 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 GTF2H1P32780 548 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 GPC3P51654 580 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 POLE2P56282 527 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 CDK16Q00536 496 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 CNTN2Q02246 1040 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 TRIP13Q15645 432 aaPredicted RBP16.66■□□□□ 0.26
HMGA1-202ENST00000347617 RNF220Q5VTB9 566 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 CYP4F22Q6NT55 531 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 CENPUQ71F23 418 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 PCGF5Q86SE9 256 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 USP37Q86T82 979 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 CHSY1Q86X52 802 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 DAW1Q8N136 415 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 KREMEN1Q96MU8 473 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 NT5C1BQ96P26 610 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 DRG1Q9Y295 367 aaKnown RBP16.66■□□□□ 0.26
HMGA1-202ENST00000347617 KIAA1217Q5T5P2 1943 aa16.66■□□□□ 0.26
HMGA1-202ENST00000347617 STBD1O95210 358 aa16.65■□□□□ 0.26
HMGA1-202ENST00000347617 GCLMP48507 274 aa16.65■□□□□ 0.26
HMGA1-202ENST00000347617 ARFIP2P53365 341 aa16.65■□□□□ 0.26
HMGA1-202ENST00000347617 ACTR2P61160 394 aa16.65■□□□□ 0.26
HMGA1-202ENST00000347617 SLC1A5Q15758 541 aa16.65■□□□□ 0.26
HMGA1-202ENST00000347617 KLHL38Q2WGJ6 581 aa16.65■□□□□ 0.26
HMGA1-202ENST00000347617 P3H1Q32P28 736 aa16.65■□□□□ 0.26
HMGA1-202ENST00000347617 LRRC23Q53EV4 343 aaPredicted RBP16.65■□□□□ 0.26
HMGA1-202ENST00000347617 ACSBG2Q5FVE4 666 aa16.65■□□□□ 0.26
HMGA1-202ENST00000347617 GSTA5Q7RTV2 222 aa16.65■□□□□ 0.26
HMGA1-202ENST00000347617 SLC47A2Q86VL8 602 aa16.65■□□□□ 0.26
HMGA1-202ENST00000347617 UCMAQ8WVF2 138 aa16.65■□□□□ 0.26
HMGA1-202ENST00000347617 EZH1Q92800 747 aaPredicted RBP16.65■□□□□ 0.26
HMGA1-202ENST00000347617 MS4A4AQ96JQ5 239 aa16.65■□□□□ 0.26
HMGA1-202ENST00000347617 MIS12Q9H081 205 aa16.65■□□□□ 0.26
HMGA1-202ENST00000347617 NPHS2Q9NP85 383 aa16.65■□□□□ 0.26
HMGA1-202ENST00000347617 POC1B-GALNT4F8VUJ3 575 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 K7ENM7 598 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 SMAPO00193 183 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 ZC3H11AO75152 810 aaKnown RBP eCLIP16.64■□□□□ 0.252e-11■□□□□ 8.9
HMGA1-202ENST00000347617 PENKP01210 267 aaPredicted RBP16.64■□□□□ 0.25
HMGA1-202ENST00000347617 ABCD1P33897 745 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 GEMIN4P57678 1058 aaKnown RBP16.64■□□□□ 0.25
HMGA1-202ENST00000347617 RTP1P59025 263 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 BPIFB4P59827 614 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 RPL26P61254 145 aaKnown RBP16.64■□□□□ 0.25
HMGA1-202ENST00000347617 CCNA1P78396 465 aa16.64■□□□□ 0.25
HMGA1-202ENST00000347617 CDK18Q07002 472 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms