RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 TMEM176AQ96HP8 235 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 ZSWIM1Q9BR11 485 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 C11orf70Q9BRQ4 267 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 TSEN34Q9BSV6 310 aaKnown RBP13.55□□□□□ -0.24
CLK3-201ENST00000345005 RAB17Q9H0T7 212 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 CARD9Q9H257 536 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 CXCL16Q9H2A7 254 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 KLC4Q9NSK0 619 aa13.55□□□□□ -0.24
CLK3-201ENST00000345005 CHORDC1Q9UHD1 332 aaPredicted RBP13.55□□□□□ -0.24
CLK3-201ENST00000345005 UTP11Q9Y3A2 253 aaKnown RBP13.55□□□□□ -0.24
CLK3-201ENST00000345005 MOXD2PA6NHM9 499 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 MYO1FO00160 1098 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 GHRP10912 638 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 VDRP11473 427 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 CYP3A5P20815 502 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 COMTP21964 271 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 MMP8P22894 467 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 THPOP40225 353 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 NFX1Q12986 1120 aaKnown RBP13.54□□□□□ -0.24
CLK3-201ENST00000345005 PTK7Q13308 1070 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 C9orf57Q5W0N0 161 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 TTC19Q6DKK2 380 aaPredicted RBP13.54□□□□□ -0.24
CLK3-201ENST00000345005 PLEKHA7Q6IQ23 1121 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 HOOK3Q86VS8 718 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 SEC14L1Q92503 715 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 WNT8BQ93098 351 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 C18orf25Q96B23 403 aaPredicted RBP13.54□□□□□ -0.24
CLK3-201ENST00000345005 CCDC114Q96M63 670 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 ELOVL4Q9GZR5 314 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 RNF39Q9H2S5 420 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 HMX1Q9NP08 348 aaPredicted RBP13.54□□□□□ -0.24
CLK3-201ENST00000345005 PARVAQ9NVD7 372 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 SMARCAL1Q9NZC9 954 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 KLK14Q9P0G3 267 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 TUBGCP4Q9UGJ1 667 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 ANAPC7Q9UJX3 599 aa13.54□□□□□ -0.24
CLK3-201ENST00000345005 H0YGN5 161 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 PIRO00625 290 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 SPOPO43791 374 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 CTSHP09668 335 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 PNPLA4P41247 253 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 SLC1A1P43005 524 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 PTP4A2Q12974 167 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 CNGA2Q16280 664 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 LACTB2Q53H82 288 aaPredicted RBP13.53□□□□□ -0.24
CLK3-201ENST00000345005 GLRA4Q5JXX5 417 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 GKAP1Q5VSY0 366 aaPredicted RBP13.53□□□□□ -0.24
CLK3-201ENST00000345005 ERICH1Q86X53 443 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 CACNA2D3Q8IZS8 1091 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 HEXIM2Q96MH2 286 aaKnown RBP13.53□□□□□ -0.24
CLK3-201ENST00000345005 ZNF560Q96MR9 790 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 NT5C1AQ9BXI3 368 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 KDM4CQ9H3R0 1056 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 NOD1Q9Y239 953 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 NFS1Q9Y697 457 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 SART1O43290 800 aaKnown RBP13.53□□□□□ -0.24
CLK3-201ENST00000345005 RASSF9O75901 435 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 INHAP05111 366 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 CTNNA2P26232 953 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 SLC8A1P32418 973 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 NDST1P52848 882 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 RNASE9P60153 205 aaKnown RBP13.53□□□□□ -0.24
CLK3-201ENST00000345005 IFT88Q13099 833 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 MAMLD1Q13495 774 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 SGO2Q562F6 1265 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 KLHL7Q8IXQ5 586 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 WDTC1Q8N5D0 677 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 CD101Q93033 1021 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 BTBD6Q96KE9 485 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 GLT1D1Q96MS3 346 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 HINFPQ9BQA5 517 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 STMN4Q9H169 189 aaPredicted RBP13.53□□□□□ -0.24
CLK3-201ENST00000345005 FAM105AQ9NUU6 356 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 SAGE1Q9NXZ1 904 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 STRIP2Q9ULQ0 834 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 PCDHA3Q9Y5H8 950 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.53□□□□□ -0.24
CLK3-201ENST00000345005 SNX9Q9Y5X1 595 aa13.53□□□□□ -0.24
CLK3-201ENST00000345005 TDRD15B5MCY1 1934 aaKnown RBP13.52□□□□□ -0.24
CLK3-201ENST00000345005 KRIT1O00522 736 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 ITGA4P13612 1032 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 GRK4P32298 578 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 PEX5P50542 639 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 TAP1Q03518 808 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 STILQ15468 1287 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 C2CD6Q53TS8 623 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 FAM26DQ5JW98 314 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 FBXO47Q5MNV8 452 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 DENND1BQ6P3S1 775 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 CCDC13Q8IYE1 715 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 ANKS4BQ8N8V4 417 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 ARRDC4Q8NCT1 418 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 FEZF2Q8TBJ5 459 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 ZNF296Q8WUU4 475 aaPredicted RBP13.52□□□□□ -0.25
CLK3-201ENST00000345005 TWNKQ96RR1 684 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 DNAI2Q9GZS0 605 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 SLC12A6Q9UHW9 1150 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 SQORQ9Y6N5 450 aa13.52□□□□□ -0.25
CLK3-201ENST00000345005 GOLGA6L10A0A0M3HER8 536 aa13.51□□□□□ -0.25
CLK3-201ENST00000345005 ESYT3A0FGR9 886 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms