RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 LPXNO60711 386 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 FGF18O76093 207 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 IL1R1P14778 569 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 MAKP20794 623 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 FGFR2P21802 821 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 ACVR2AP27037 513 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 IL1R2P27930 398 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 CD6P30203 668 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 TP53BP2Q13625 1128 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 ARHGEF7Q14155 803 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 E2F2Q14209 437 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 SLC29A2Q14542 456 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 PLA1AQ53H76 456 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 FAM209BQ5JX69 171 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 RBM20Q5T481 1227 aaKnown RBP4.06□□□□□ -1.76
HMGB1-201ENST00000326004 LCE4AQ5TA78 99 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 UNC13DQ70J99 1090 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 RNF44Q7L0R7 432 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 MRGPREQ86SM8 312 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 SPICE1Q8N0Z3 855 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 PMM1Q92871 262 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 VPS11Q9H270 941 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 CERS4Q9HA82 394 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 ARFGAP3Q9NP61 516 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 SLC2A4RGQ9NR83 387 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 DMTF1Q9Y222 760 aa4.06□□□□□ -1.76
HMGB1-201ENST00000326004 PIPSLA2A3N6 862 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 AQP7P3A6NL99 342 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 KRTAP9-7A8MTY7 169 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 PROM1O43490 865 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 SETSIPP0DME0 302 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 EGR2P11161 476 aaPredicted RBP4.05□□□□□ -1.76
HMGB1-201ENST00000326004 MYL4P12829 197 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 BTF3P20290 206 aaKnown RBP4.05□□□□□ -1.76
HMGB1-201ENST00000326004 GATA3P23771 443 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 SERPINB3P29508 390 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 CPT1AP50416 773 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 DGKEP52429 567 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 NXPH1P58417 271 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 ITIH3Q06033 890 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 SCAPQ12770 1279 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 MYO1EQ12965 1108 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 PTPAQ15257 358 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 ARL13BQ3SXY8 428 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 FNDC7Q5VTL7 733 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 ICE2Q659A1 982 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 HIBCHQ6NVY1 386 aaPredicted RBP4.05□□□□□ -1.76
HMGB1-201ENST00000326004 ZDHHC24Q6UX98 284 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 CATSPERGQ6ZRH7 1159 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 GPR149Q86SP6 731 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 LNX2Q8N448 690 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 FANCBQ8NB91 859 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 B3GALNT2Q8NCR0 500 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 SSH3Q8TE77 659 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 FAM136AQ96C01 138 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 PTCD3Q96EY7 689 aaKnown RBP4.05□□□□□ -1.76
HMGB1-201ENST00000326004 ZNF747Q9BV97 191 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 ZNF341Q9BYN7 854 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 FAM83DQ9H4H8 585 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 TESQ9UGI8 421 aaKnown RBP4.05□□□□□ -1.76
HMGB1-201ENST00000326004 MID2Q9UJV3 735 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 NDRG4Q9ULP0 352 aaKnown RBP4.05□□□□□ -1.76
HMGB1-201ENST00000326004 CAPN11Q9UMQ6 739 aa4.05□□□□□ -1.76
HMGB1-201ENST00000326004 ABHD14A-ACY1A0A1B0GW23 586 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 NCK2O43639 380 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 A1BGP04217 495 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 ITGAMP11215 1152 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 PPP3CBP16298 524 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 TPH1P17752 444 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 MCM7P33993 719 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 TAP1Q03518 808 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 PMS2P11Q13670 270 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 ZIK1Q3SY52 487 aaPredicted RBP4.04□□□□□ -1.76
HMGB1-201ENST00000326004 LCE1DQ5T752 114 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 TEDDM1Q5T9Z0 273 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 ARHGAP40Q5TG30 622 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 KLHDC7AQ5VTJ3 777 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 XRRA1Q6P2D8 792 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 USP17L6PQ6QN14 398 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 KRT28Q7Z3Y7 464 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 ZNF280BQ86YH2 543 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 VGLL2Q8N8G2 317 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 BPIFB1Q8TDL5 484 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 ASB10Q8WXI3 467 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 WDR11Q9BZH6 1224 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 AMBRA1Q9C0C7 1298 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 SERHL2Q9H4I8 314 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 PLCB1Q9NQ66 1216 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 CASS4Q9NQ75 786 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 KCTD5Q9NXV2 234 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 FNIP2Q9P278 1114 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 ANKFY1Q9P2R3 1169 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 TAGLN3Q9UI15 199 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 CDY1Q9Y6F8 540 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 FER1L4A9Z1Z3 1794 aa4.04□□□□□ -1.76
HMGB1-201ENST00000326004 RAB27BO00194 218 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 HNRNPDLO14979 420 aaKnown RBP4.03□□□□□ -1.76
HMGB1-201ENST00000326004 MATN3O15232 486 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 RRP9O43818 475 aaKnown RBP4.03□□□□□ -1.76
HMGB1-201ENST00000326004 ZNF202O95125 648 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms