RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 ADAM22Q9P0K1 906 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 CHORDC1Q9UHD1 332 aaPredicted RBP10.62□□□□□ -0.71
HMGB3-201ENST00000325307 INTUQ9ULD6 942 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 PCDHB8Q9UN66 801 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 PCDHGC3Q9UN70 934 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 SF3B1O75533 1304 aaKnown RBP eCLIP10.62□□□□□ -0.71
HMGB3-201ENST00000325307 TMEM189-UBE2V1I3L0A0 370 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 GABRDO14764 452 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 PJA2O43164 708 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 FAM163BP0C2L3 166 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 TMEM253P0C7T8 217 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 UNGP13051 313 aaPredicted RBP10.62□□□□□ -0.71
HMGB3-201ENST00000325307 TKTP29401 623 aaKnown RBP10.62□□□□□ -0.71
HMGB3-201ENST00000325307 TMEM240Q5SV17 173 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 CRYBG2Q8N1P7 616 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 RNF217Q8TC41 542 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 SLC2A14Q8TDB8 520 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 NOX5Q96PH1 765 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 ZNF446Q9NWS9 450 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 CXXC1Q9P0U4 656 aaPredicted RBP10.62□□□□□ -0.71
HMGB3-201ENST00000325307 CTTNBP2NLQ9P2B4 639 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 H2AFXP16104 143 aaPredicted RBP10.61□□□□□ -0.71
HMGB3-201ENST00000325307 GPC5P78333 572 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 CENPCQ03188 943 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 CCDC142Q17RM4 750 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 LIN9Q5TKA1 542 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 ERICH1Q86X53 443 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 EPC1Q9H2F5 836 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 SLC4A7Q9Y6M7 1214 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 TSPY1Q01534 308 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 FUT10Q6P4F1 479 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 LCLAT1Q6UWP7 414 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 ZNF662Q6ZS27 426 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 RSRC2Q7L4I2 434 aaKnown RBP10.61□□□□□ -0.71
HMGB3-201ENST00000325307 MCOLN2Q8IZK6 566 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 MSANTD4Q8NCY6 345 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 ARHGEF26Q96DR7 871 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 B3GALT6Q96L58 329 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 ALS2CR12Q96Q35 445 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 GPR62Q9BZJ7 368 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 MTIF3Q9H2K0 278 aaKnown RBP10.61□□□□□ -0.71
HMGB3-201ENST00000325307 CALCOCO1Q9P1Z2 691 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 CNOT8Q9UFF9 292 aaKnown RBP10.61□□□□□ -0.71
HMGB3-201ENST00000325307 CYP11A1P05108 521 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 TYMPP19971 482 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 AMPD2Q01433 879 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 ELAVL2Q12926 359 aaKnown RBP10.61□□□□□ -0.71
HMGB3-201ENST00000325307 PPP1R2P3Q6NXS1 205 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 TMEM173Q86WV6 379 aaPredicted RBP10.61□□□□□ -0.71
HMGB3-201ENST00000325307 RFFLQ8WZ73 363 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 TRIM11Q96F44 468 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 ZNF558Q96NG5 402 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 ZNF518BQ9C0D4 1074 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 LHX5Q9H2C1 402 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 MARCH5Q9NX47 278 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 SALL4Q9UJQ4 1053 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 GTF3C4Q9UKN8 822 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 CDH9Q9ULB4 789 aa10.61□□□□□ -0.71
HMGB3-201ENST00000325307 ALPK3Q96L96 1907 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 SLC8A3P57103 927 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 IFI16Q16666 785 aaKnown RBP10.6□□□□□ -0.71
HMGB3-201ENST00000325307 CMTR2Q8IYT2 770 aaKnown RBP10.6□□□□□ -0.71
HMGB3-201ENST00000325307 KRT222Q8N1A0 295 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 SLC35G2Q8TBE7 412 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 CWH43Q9H720 699 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 MYBPHLA2RUH7 354 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 CLDN5O00501 218 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 RGS7P49802 495 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 CYP4A22Q5TCH4 519 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 KCNT2Q6UVM3 1135 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 ZNF689Q96CS4 500 aaPredicted RBP10.6□□□□□ -0.71
HMGB3-201ENST00000325307 ACBD6Q9BR61 282 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 CRTAC1Q9NQ79 661 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 NR2E3Q9Y5X4 410 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 MRPL42Q9Y6G3 142 aaKnown RBP10.6□□□□□ -0.71
HMGB3-201ENST00000325307 PIK3R2O00459 728 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 GJB5O95377 273 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 ATP2A2P16615 1042 aaKnown RBP10.6□□□□□ -0.71
HMGB3-201ENST00000325307 RRM1P23921 792 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 ARPP19P56211 112 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 KIAA0319Q5VV43 1072 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 ARHGAP17Q68EM7 881 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 KIAA1841Q6NSI8 718 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 MON1BQ7L1V2 547 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 PHF13Q86YI8 300 aaPredicted RBP10.6□□□□□ -0.71
HMGB3-201ENST00000325307 WDTC1Q8N5D0 677 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 TMEM169Q96HH4 297 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 NUP85Q9BW27 656 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 OSGEPQ9NPF4 335 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 CAPN6Q9Y6Q1 641 aa10.6□□□□□ -0.71
HMGB3-201ENST00000325307 EFCAB8A8MWE9 144 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 SYN3O14994 580 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 CALB1P05937 261 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 MYBL1P10243 752 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 LAG3P18627 525 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 BCAT1P54687 386 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 C1QBPQ07021 282 aaKnown RBP10.59□□□□□ -0.71
HMGB3-201ENST00000325307 CTXN3Q4LDR2 81 aa10.59□□□□□ -0.71
HMGB3-201ENST00000325307 INTS6LQ5JSJ4 861 aaKnown RBP10.59□□□□□ -0.71
HMGB3-201ENST00000325307 VARS2Q5ST30 1063 aaKnown RBP10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms