RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 RUNDC3BQ96NL0 473 aa6.91□□□□□ -1.3
USP47-201ENST00000305481 RUFY1Q96T51 708 aa6.91□□□□□ -1.3
USP47-201ENST00000305481 NT5C1AQ9BXI3 368 aa6.91□□□□□ -1.3
USP47-201ENST00000305481 METTL5Q9NRN9 209 aaKnown RBP6.91□□□□□ -1.3
USP47-201ENST00000305481 TSPAN16Q9UKR8 245 aa6.91□□□□□ -1.3
USP47-201ENST00000305481 ATP8A1Q9Y2Q0 1164 aa6.91□□□□□ -1.3
USP47-201ENST00000305481 PIK3R2O00459 728 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 PGK1P00558 417 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 C6orf222P0C671 652 aaPredicted RBP6.9□□□□□ -1.3
USP47-201ENST00000305481 IGFBP6P24592 240 aaPredicted RBP6.9□□□□□ -1.3
USP47-201ENST00000305481 AXLP30530 894 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 SOX4Q06945 474 aaPredicted RBP6.9□□□□□ -1.3
USP47-201ENST00000305481 TRIM32Q13049 653 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 CCNG2Q16589 344 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 CEP85LQ5SZL2 805 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 PPP1R26Q5T8A7 1209 aaPredicted RBP6.9□□□□□ -1.3
USP47-201ENST00000305481 CXCL17Q6UXB2 119 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 SPOCD1Q6ZMY3 1216 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 ACOT1Q86TX2 421 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 LRRC52Q8N7C0 313 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 MAIP1Q8WWC4 291 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 TRIM6Q9C030 488 aaPredicted RBP6.9□□□□□ -1.3
USP47-201ENST00000305481 FAM124BQ9H5Z6 455 aaPredicted RBP6.9□□□□□ -1.3
USP47-201ENST00000305481 TMBIM4Q9HC24 238 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 CA12O43570 354 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 KRT1P04264 644 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 PSMA2P25787 234 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 CDKN2BP42772 138 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 GJA9P57773 515 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 PTK6Q13882 451 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 PPP1R7Q15435 360 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 TRIP13Q15645 432 aaPredicted RBP6.9□□□□□ -1.3
USP47-201ENST00000305481 RAB6CQ53S08 254 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 KCNT1Q5JUK3 1230 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 GNASQ5JWF2 1037 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 ZNF618Q5T7W0 954 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 APBB1IPQ7Z5R6 666 aaPredicted RBP6.9□□□□□ -1.3
USP47-201ENST00000305481 PRUNE1Q86TP1 453 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 FAM228AQ86W67 206 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 TTC30AQ86WT1 665 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 NME8Q8N427 588 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 GOLGA6L1Q8N7Z2 621 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 FAM76AQ8TAV0 307 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 FNIP1Q8TF40 1166 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 KBTBD7Q8WVZ9 684 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 KATNAL1Q9BW62 490 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 RAB6CQ9H0N0 254 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 DPEP3Q9H4B8 488 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 SYNCQ9H7C4 482 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 GOLGA2P5Q9HBQ8 144 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 AAASQ9NRG9 546 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 KIAA1257Q9ULG3 409 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 IPPQ9Y573 584 aa6.9□□□□□ -1.3
USP47-201ENST00000305481 PDCD11Q14690 1871 aaKnown RBP6.9□□□□□ -1.3
USP47-201ENST00000305481 hCG_1818297A0A087WSY0 165 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 E5RJQ4 531 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 SHBGP04278 402 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 FGFR1P11362 822 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 KCNE1P15382 129 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 PSMC4P43686 418 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 PMS2P54278 862 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 SREBF2Q12772 1141 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 MTMR3Q13615 1198 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 TAF5Q15542 800 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 SMTNL2Q2TAL5 461 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 NBPF20Q3BBV1 942 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 SH3PXD2AQ5TCZ1 1133 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 KAZNQ674X7 775 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 GDF6Q6KF10 455 aaPredicted RBP6.9□□□□□ -1.31
USP47-201ENST00000305481 PMF1Q6P1K2 205 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 RHBDF2Q6PJF5 856 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 BEST2Q8NFU1 509 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 ATL2Q8NHH9 583 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 OSBPL7Q9BZF2 842 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 SEMA4AQ9H3S1 761 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 WDR35Q9P2L0 1181 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 LCMT1Q9UIC8 334 aa6.9□□□□□ -1.31
USP47-201ENST00000305481 ERICH4A6NGS2 130 aa6.89□□□□□ -1.31
USP47-201ENST00000305481 MEIS3P2A8K0S8 358 aa6.89□□□□□ -1.31
USP47-201ENST00000305481 LMO2P25791 158 aa6.89□□□□□ -1.31
USP47-201ENST00000305481 PTPN7P35236 360 aa6.89□□□□□ -1.31
USP47-201ENST00000305481 FLT3LGP49771 235 aa6.89□□□□□ -1.31
USP47-201ENST00000305481 GOLGA7BQ2TAP0 167 aa6.89□□□□□ -1.31
USP47-201ENST00000305481 DNAJC21Q5F1R6 531 aaKnown RBP6.89□□□□□ -1.31
USP47-201ENST00000305481 SPDYCQ5MJ68 293 aa6.89□□□□□ -1.31
USP47-201ENST00000305481 LIMS2Q7Z4I7 341 aa6.89□□□□□ -1.31
USP47-201ENST00000305481 POLNQ7Z5Q5 900 aa6.89□□□□□ -1.31
USP47-201ENST00000305481 TTC39CQ8N584 583 aa6.89□□□□□ -1.31
USP47-201ENST00000305481 GLIS1Q8NBF1 620 aa6.89□□□□□ -1.31
USP47-201ENST00000305481 KHSRPQ92945 711 aaKnown RBP eCLIP6.89□□□□□ -1.31
USP47-201ENST00000305481 RBM41Q96IZ5 413 aaKnown RBP6.89□□□□□ -1.31
USP47-201ENST00000305481 ATP6V1G3Q96LB4 118 aa6.89□□□□□ -1.31
USP47-201ENST00000305481 PABPC3Q9H361 631 aaKnown RBP6.89□□□□□ -1.31
USP47-201ENST00000305481 FAM49BQ9NUQ9 324 aa6.89□□□□□ -1.31
USP47-201ENST00000305481 WHRNQ9P202 907 aa6.89□□□□□ -1.31
USP47-201ENST00000305481 PARP2Q9UGN5 583 aa6.89□□□□□ -1.31
USP47-201ENST00000305481 GTF2IRD1Q9UHL9 959 aa6.89□□□□□ -1.31
USP47-201ENST00000305481 DNPEPQ9ULA0 475 aa6.89□□□□□ -1.31
USP47-201ENST00000305481 UBQLN1Q9UMX0 589 aaKnown RBP6.89□□□□□ -1.31
USP47-201ENST00000305481 SCN10AQ9Y5Y9 1956 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms