RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 RNF217Q8TC41 542 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 SEPT8Q92599 483 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 INPP5DQ92835 1189 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 ZNF669Q96BR6 464 aaPredicted RBP13.36□□□□□ -0.27
COL3A1-201ENST00000304636 NT5C1AQ9BXI3 368 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 PCDHGC5Q9Y5F6 944 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 POLRMTO00411 1230 aaKnown RBP13.36□□□□□ -0.27
COL3A1-201ENST00000304636 GRK2P25098 689 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 R3HDM1Q15032 1099 aaKnown RBP13.36□□□□□ -0.27
COL3A1-201ENST00000304636 C6orf10Q5SRN2 563 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 BTBD8Q5XKL5 378 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 MFN1Q8IWA4 741 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 LZICQ8WZA0 190 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 ACSF2Q96CM8 615 aaPredicted RBP13.36□□□□□ -0.27
COL3A1-201ENST00000304636 NMD3Q96D46 503 aaKnown RBP13.36□□□□□ -0.27
COL3A1-201ENST00000304636 ADGRB2O60241 1585 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 MOCS2O96007 188 aaPredicted RBP13.36□□□□□ -0.27
COL3A1-201ENST00000304636 ACADSBP45954 432 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 ZNF235Q14590 738 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 ANO4Q32M45 955 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 COBLL1Q53SF7 1204 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 KIAA1841Q6NSI8 718 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 TAS2R42Q7RTR8 314 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 EFL1Q7Z2Z2 1120 aaKnown RBP13.36□□□□□ -0.27
COL3A1-201ENST00000304636 WNK4Q96J92 1243 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 FAR2Q96K12 515 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 RPAP3Q9H6T3 665 aaPredicted RBP13.36□□□□□ -0.27
COL3A1-201ENST00000304636 SLC39A10Q9ULF5 831 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 SNX9Q9Y5X1 595 aa13.36□□□□□ -0.27
COL3A1-201ENST00000304636 MAFGO15525 162 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 PTGER2P43116 358 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 DMC1Q14565 340 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 SPOCD1Q6ZMY3 1216 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 ATPAF2Q8N5M1 289 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 TTLL6Q8N841 843 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 RDM1Q8NG50 284 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 SLC20A1Q8WUM9 679 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 LPAR1Q92633 364 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 WRNIP1Q96S55 665 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 FAM192AQ9GZU8 254 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 MYLK2Q9H1R3 596 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 MMADHCQ9H3L0 296 aaPredicted RBP13.35□□□□□ -0.27
COL3A1-201ENST00000304636 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.35□□□□□ -0.27
COL3A1-201ENST00000304636 PNMA3Q9UL41 463 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 DNAJC16Q9Y2G8 782 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 GRAP2O75791 330 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 SERPINB5P36952 375 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 BAG6P46379 1132 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 OTUD4Q01804 1114 aaKnown RBP13.35□□□□□ -0.27
COL3A1-201ENST00000304636 PRKCEQ02156 737 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 SWT1Q5T5J6 900 aaKnown RBP13.35□□□□□ -0.27
COL3A1-201ENST00000304636 PCNX4Q63HM2 1172 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 CDC42EP5Q6NZY7 148 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 TNIP2Q8NFZ5 429 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 TFB1MQ8WVM0 346 aaKnown RBP13.35□□□□□ -0.27
COL3A1-201ENST00000304636 DCLK3Q9C098 648 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 KCNH7Q9NS40 1196 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 SLC8A2Q9UPR5 921 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 SHOC2Q9UQ13 582 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 PDE2AO00408 941 aaPredicted RBP13.35□□□□□ -0.27
COL3A1-201ENST00000304636 ZC3H12BQ5HYM0 836 aaKnown RBP13.35□□□□□ -0.27
COL3A1-201ENST00000304636 LRRC74BQ6ZQY2 392 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 TRAPPC9Q96Q05 1148 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 CASS4Q9NQ75 786 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 ENTPD3O75355 529 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 SERPINB8P50452 374 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 KRT72Q14CN4 511 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 NAPEPLDQ6IQ20 393 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 LAYNQ6UX15 382 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 SCFD2Q8WU76 684 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 ZNF518BQ9C0D4 1074 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 INTS13Q9NVM9 706 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 WDR47O94967 919 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 RRM1P23921 792 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 CLEC16AQ2KHT3 1053 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 MIEF2Q96C03 454 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 NDFIP2Q9NV92 336 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 PCDHGB4Q9UN71 923 aa13.35□□□□□ -0.27
COL3A1-201ENST00000304636 USP1O94782 785 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 EPHB2P29323 1055 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 EARS2Q5JPH6 523 aaKnown RBP13.34□□□□□ -0.27
COL3A1-201ENST00000304636 ZNF720Q7Z2F6 126 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 KDELC2Q7Z4H8 507 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 APPL2Q8NEU8 664 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 TMC2Q8TDI7 906 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 TMEM237Q96Q45 408 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 PCDH9Q9HC56 1237 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 CEP170BQ9Y4F5 1589 aaPredicted RBP13.34□□□□□ -0.27
COL3A1-201ENST00000304636 ATP5BP06576 529 aaKnown RBP13.34□□□□□ -0.27
COL3A1-201ENST00000304636 NR3C2P08235 984 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 MRPL28Q13084 256 aaKnown RBP13.34□□□□□ -0.27
COL3A1-201ENST00000304636 OASLQ15646 514 aaKnown RBP13.34□□□□□ -0.27
COL3A1-201ENST00000304636 Q4G0T1 1027 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 OPTNQ96CV9 577 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 RMDN1Q96DB5 314 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 CYP39A1Q9NYL5 469 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 NINJ2Q9NZG7 142 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 SLCO1B7G3V0H7 640 aa13.34□□□□□ -0.27
COL3A1-201ENST00000304636 TNPO2O14787 897 aaKnown RBP13.34□□□□□ -0.27
COL3A1-201ENST00000304636 C21orf2O43822 256 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms