RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 PANX2Q96RD6 677 aa10.08□□□□□ -0.8
RFX3-201ENST00000302303 HNRNPABQ99729 332 aaKnown RBP10.08□□□□□ -0.8
RFX3-201ENST00000302303 ZNF518BQ9C0D4 1074 aa10.08□□□□□ -0.8
RFX3-201ENST00000302303 NUCKS1Q9H1E3 243 aaKnown RBP10.08□□□□□ -0.8
RFX3-201ENST00000302303 FAM49BQ9NUQ9 324 aa10.08□□□□□ -0.8
RFX3-201ENST00000302303 STK39Q9UEW8 545 aa10.08□□□□□ -0.8
RFX3-201ENST00000302303 KIAA1257Q9ULG3 409 aa10.08□□□□□ -0.8
RFX3-201ENST00000302303 PCDHGC3Q9UN70 934 aa10.08□□□□□ -0.8
RFX3-201ENST00000302303 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.08□□□□□ -0.8
RFX3-201ENST00000302303 COL4A4P53420 1690 aaPredicted RBP10.08□□□□□ -0.8
RFX3-201ENST00000302303 MYO7AQ13402 2215 aa10.08□□□□□ -0.8
RFX3-201ENST00000302303 MTMR11A4FU01 709 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 HHLA1C9JL84 531 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 TULP2O00295 520 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 DDX3XO00571 662 aaKnown RBP eCLIP10.07□□□□□ -0.8
RFX3-201ENST00000302303 ZNF263O14978 683 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 MICAL2O94851 1124 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 CLSTN1O94985 981 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 SERPING1P05155 500 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 URODP06132 367 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 GNA15P30679 374 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 CDH5P33151 784 aaPredicted RBP10.07□□□□□ -0.8
RFX3-201ENST00000302303 GPD2P43304 727 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 CDR2Q01850 454 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 ASIC2Q16515 512 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 SLC39A12Q504Y0 691 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 PLPP4Q5VZY2 271 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 KIAA1841Q6NSI8 718 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 DENND1BQ6P3S1 775 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 LCLAT1Q6UWP7 414 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 GLYCTKQ8IVS8 523 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 ZNF397Q8NF99 534 aaPredicted RBP10.07□□□□□ -0.8
RFX3-201ENST00000302303 ZNF461Q8TAF7 563 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 FEZF2Q8TBJ5 459 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 SLC2A14Q8TDB8 520 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 SLC22A17Q8WUG5 538 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 SLC35F5Q8WV83 523 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 MYLPFQ96A32 169 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 TNIP3Q96KP6 325 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 SMOQ99835 787 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 AGPAT1Q99943 283 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 OXCT2Q9BYC2 517 aaPredicted RBP10.07□□□□□ -0.8
RFX3-201ENST00000302303 LMAN2LQ9H0V9 348 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 CSNK1G1Q9HCP0 422 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 NGRNQ9NPE2 291 aaKnown RBP10.07□□□□□ -0.8
RFX3-201ENST00000302303 TSPAN16Q9UKR8 245 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 XIRP2A4UGR9 3374 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 PTPRDP23468 1912 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 TMEM265A0A087WTH1 108 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.07□□□□□ -0.8
RFX3-201ENST00000302303 CSPG5O95196 566 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 CYP1A1P04798 512 aaPredicted RBP10.07□□□□□ -0.8
RFX3-201ENST00000302303 UNGP13051 313 aaPredicted RBP10.07□□□□□ -0.8
RFX3-201ENST00000302303 ATF2P15336 505 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 POU3F3P20264 500 aaPredicted RBP10.07□□□□□ -0.8
RFX3-201ENST00000302303 CYP2F1P24903 491 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 RPL34P49207 117 aaKnown RBP10.07□□□□□ -0.8
RFX3-201ENST00000302303 CLCN4P51793 760 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 BPIFB4P59827 614 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 CCZ1BP86790 482 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 CCZ1P86791 482 aaPredicted RBP10.07□□□□□ -0.8
RFX3-201ENST00000302303 RBM10P98175 930 aaKnown RBP10.07□□□□□ -0.8
RFX3-201ENST00000302303 KLHL30Q0D2K2 578 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 SMC1AQ14683 1233 aaKnown RBP10.07□□□□□ -0.8
RFX3-201ENST00000302303 MTF1Q14872 753 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 CFAP221Q4G0U5 840 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 SGO2Q562F6 1265 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 TAF3Q5VWG9 929 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 DNAAF5Q86Y56 855 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 LRRC8AQ8IWT6 810 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 ANKRD52Q8NB46 1076 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 VN1R2Q8NFZ6 395 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 UBA3Q8TBC4 463 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 SPOCK2Q92563 424 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 MRPL38Q96DV4 380 aaKnown RBP10.07□□□□□ -0.8
RFX3-201ENST00000302303 PGLYRP2Q96PD5 576 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 KCNK16Q96T55 309 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 LHX5Q9H2C1 402 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 KCNF1Q9H3M0 494 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 PRDM12Q9H4Q4 367 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.07□□□□□ -0.8
RFX3-201ENST00000302303 TAS2R14Q9NYV8 317 aa10.07□□□□□ -0.8
RFX3-201ENST00000302303 A0A087X0T9 212 aa10.06□□□□□ -0.8
RFX3-201ENST00000302303 PER2O15055 1255 aa10.06□□□□□ -0.8
RFX3-201ENST00000302303 THAP12O43422 761 aa10.06□□□□□ -0.8
RFX3-201ENST00000302303 TGM5O43548 720 aa10.06□□□□□ -0.8
RFX3-201ENST00000302303 CLASP2O75122 1294 aaKnown RBP10.06□□□□□ -0.8
RFX3-201ENST00000302303 SOAT2O75908 522 aa10.06□□□□□ -0.8
RFX3-201ENST00000302303 FAM228BP0C875 321 aa10.06□□□□□ -0.8
RFX3-201ENST00000302303 CD19P15391 556 aa10.06□□□□□ -0.8
RFX3-201ENST00000302303 BDNFP23560 247 aa10.06□□□□□ -0.8
RFX3-201ENST00000302303 GTF2F1P35269 517 aaKnown RBP eCLIP10.06□□□□□ -0.8
RFX3-201ENST00000302303 EIF4A3P38919 411 aaKnown RBP10.06□□□□□ -0.8
RFX3-201ENST00000302303 GPR15P49685 360 aa10.06□□□□□ -0.8
RFX3-201ENST00000302303 NDUFV1P49821 464 aa10.06□□□□□ -0.8
RFX3-201ENST00000302303 ARPP19P56211 112 aa10.06□□□□□ -0.8
RFX3-201ENST00000302303 TSPY1Q01534 308 aa10.06□□□□□ -0.8
RFX3-201ENST00000302303 PDE4CQ08493 712 aa10.06□□□□□ -0.8
RFX3-201ENST00000302303 ADCY1Q08828 1119 aa10.06□□□□□ -0.8
RFX3-201ENST00000302303 PTP4A2Q12974 167 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms