RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 HHIPQ96QV1 700 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 PI4K2AQ9BTU6 479 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 ECT2Q9H8V3 914 aa15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 DUS2Q9NX74 493 aaKnown RBP15.89■□□□□ 0.13
CCDC88B-201ENST00000301897 NOL4O94818 638 aa15.88■□□□□ 0.13
CCDC88B-201ENST00000301897 KCNK5O95279 499 aa15.88■□□□□ 0.13
CCDC88B-201ENST00000301897 LDHAP00338 332 aaKnown RBP15.88■□□□□ 0.13
CCDC88B-201ENST00000301897 PCSK1P29120 753 aa15.88■□□□□ 0.13
CCDC88B-201ENST00000301897 HOXC13P31276 330 aa15.88■□□□□ 0.13
CCDC88B-201ENST00000301897 DDIT3P35638 169 aa15.88■□□□□ 0.13
CCDC88B-201ENST00000301897 ZC2HC1CQ53FD0 456 aaPredicted RBP15.88■□□□□ 0.13
CCDC88B-201ENST00000301897 ZNF720Q7Z2F6 126 aa15.88■□□□□ 0.13
CCDC88B-201ENST00000301897 EFCAB13Q8IY85 973 aa15.88■□□□□ 0.13
CCDC88B-201ENST00000301897 PDCL2Q8N4E4 241 aa15.88■□□□□ 0.13
CCDC88B-201ENST00000301897 LRRC52Q8N7C0 313 aa15.88■□□□□ 0.13
CCDC88B-201ENST00000301897 RPLP0P6Q8NHW5 317 aa15.88■□□□□ 0.13
CCDC88B-201ENST00000301897 FUBP3Q96I24 572 aaKnown RBP eCLIP15.88■□□□□ 0.13
CCDC88B-201ENST00000301897 DUSP15Q9H1R2 295 aaPredicted RBP15.88■□□□□ 0.13
CCDC88B-201ENST00000301897 RXFP3Q9NSD7 469 aa15.88■□□□□ 0.13
CCDC88B-201ENST00000301897 ITGA11Q9UKX5 1188 aa15.88■□□□□ 0.13
CCDC88B-201ENST00000301897 CAVIN2O95810 425 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 CKMP06732 381 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 TCF3P15923 654 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 GJB2P29033 226 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 LHX1P48742 406 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 CDR1P51861 262 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 TFAMQ00059 246 aaKnown RBP15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 USP4Q13107 963 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 DMC1Q14565 340 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 ZNF77Q15935 545 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 CFAP221Q4G0U5 840 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 INTS6LQ5JSJ4 861 aaKnown RBP15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 DAB2IPQ5VWQ8 1189 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 CRELD2Q6UXH1 353 aaPredicted RBP15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 BRAPQ7Z569 592 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 CEP295NLQ96MC4 621 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 FBRSL1Q9HCM7 1045 aaKnown RBP15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 TMLHEQ9NVH6 421 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 GDAP2Q9NXN4 497 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 DDX43Q9NXZ2 648 aaKnown RBP15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 AGAP1Q9UPQ3 857 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 FRYQ5TBA9 3013 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 NUP205Q92621 2012 aa15.87■□□□□ 0.13
CCDC88B-201ENST00000301897 IGF2RP11717 2491 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 BCLAF3A2AJT9 711 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 TISP43B9A030 160 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 NFATC1O95644 943 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 GAP43P17677 238 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 PFKLP17858 780 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 CYP2F1P24903 491 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 ADSSP30520 456 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 POLR2BP30876 1174 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 MAGEA11P43364 429 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 CREB5Q02930 508 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 ALCAMQ13740 583 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 KCNB1Q14721 858 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 DDR2Q16832 855 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 USP39Q53GS9 565 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 SPATA2LQ8IUW3 424 aaPredicted RBP15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 BRSK2Q8IWQ3 736 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 KIAA1958Q8N8K9 716 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 LRRC15Q8TF66 581 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 ACCSQ96QU6 501 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 EDEM2Q9BV94 578 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 MRPL44Q9H9J2 332 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 TRPC7Q9HCX4 862 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 STK17AQ9UEE5 414 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 L1RE1Q9UN81 338 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 R3HCC1Q9Y3T6 440 aaKnown RBP15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 ABCA7Q8IZY2 2146 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 ATRXP46100 2492 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 ANAPC1Q9H1A4 1944 aa15.86■□□□□ 0.13
CCDC88B-201ENST00000301897 KIAA1549LQ6ZVL6 1849 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 TADA3O75528 432 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 PPP1R37O75864 691 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 ITGB3P05106 788 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 GARTP22102 1010 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 GPR15P49685 360 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 DGKEP52429 567 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 RBP5P82980 135 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 PSMD2Q13200 908 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 EML3Q32P44 896 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 L1TD1Q5T7N2 865 aaKnown RBP15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 PSAPL1Q6NUJ1 521 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 C4orf50Q6ZRC1 276 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 SFR1Q86XK3 245 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 TOP6BLQ8N6T0 577 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 C1orf127Q8N9H9 656 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 TSTD1Q8NFU3 115 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 RIN3Q8TB24 985 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 TMX3Q96JJ7 454 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 FAM213AQ9BRX8 229 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 SMOC1Q9H4F8 434 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 RBAKQ9NYW8 714 aaPredicted RBP15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 EHD2Q9NZN4 543 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 CCDC39Q9UFE4 941 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 SMC3Q9UQE7 1217 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 PCDHB13Q9Y5F0 798 aa15.85■□□□□ 0.13
CCDC88B-201ENST00000301897 MYO16Q9Y6X6 1858 aa15.84■□□□□ 0.13
CCDC88B-201ENST00000301897 THADAQ6YHU6 1953 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms