RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 SLC9A2Q9UBY0 812 aa10.89□□□□□ -0.67
UPF3B-201ENST00000276201 NAALADL1Q9UQQ1 740 aa10.89□□□□□ -0.67
UPF3B-201ENST00000276201 TCRBV7S2A1N4TA0A589 114 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 TLR3O15455 904 aaKnown RBP10.88□□□□□ -0.67
UPF3B-201ENST00000276201 DHX15O43143 795 aaKnown RBP10.88□□□□□ -0.67
UPF3B-201ENST00000276201 SKAP2O75563 359 aaPredicted RBP10.88□□□□□ -0.67
UPF3B-201ENST00000276201 CREB1P16220 341 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 PTPN4P29074 926 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 SLC1A1P43005 524 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 OCRLQ01968 901 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 PPP2R5CQ13362 524 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 MESDQ14696 234 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 PDK4Q16654 411 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 SGO2Q562F6 1265 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 FAM47CQ5HY64 1035 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 SLC30A9Q6PML9 568 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 CHRDL2Q6WN34 429 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 RBBP8NLQ8NC74 664 aaPredicted RBP10.88□□□□□ -0.67
UPF3B-201ENST00000276201 ATL2Q8NHH9 583 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 SLC20A1Q8WUM9 679 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 FAM81BQ96LP2 452 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 TTC25Q96NG3 672 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 TRAPPC9Q96Q05 1148 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 KATNAL1Q9BW62 490 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 DCLK3Q9C098 648 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 PRO3102Q9H379 93 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 AVENQ9NQS1 362 aaPredicted RBP10.88□□□□□ -0.67
UPF3B-201ENST00000276201 ETAA1Q9NY74 926 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 NKX1-2Q9UD57 310 aaPredicted RBP10.88□□□□□ -0.67
UPF3B-201ENST00000276201 PRKAG2Q9UGJ0 569 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 FETUBQ9UGM5 382 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 CHKBQ9Y259 395 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 IPO5O00410 1097 aaKnown RBP10.88□□□□□ -0.67
UPF3B-201ENST00000276201 MSH4O15457 936 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 THAP12O43422 761 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 EXOC3O60645 756 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 EDF1O60869 148 aaKnown RBP10.88□□□□□ -0.67
UPF3B-201ENST00000276201 ACSL3O95573 720 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 CCNE2O96020 404 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 GSTA2P09210 222 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 ATF2P15336 505 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 CHKAP35790 457 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 TCF7P36402 384 aaPredicted RBP10.88□□□□□ -0.67
UPF3B-201ENST00000276201 WDR4P57081 412 aaKnown RBP10.88□□□□□ -0.67
UPF3B-201ENST00000276201 PTPN11Q06124 597 aaPredicted RBP10.88□□□□□ -0.67
UPF3B-201ENST00000276201 ENPEPQ07075 957 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 KCNA1Q09470 495 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 SPARCL1Q14515 664 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 ANKS1BQ7Z6G8 1248 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 TRABD2AQ86V40 505 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 SESTD1Q86VW0 696 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 GALNT15Q8N3T1 639 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 ANKRD42Q8N9B4 389 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 UHMK1Q8TAS1 419 aaKnown RBP10.88□□□□□ -0.67
UPF3B-201ENST00000276201 MGARPQ8TDB4 240 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 EPS8L1Q8TE68 723 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 C10orf82Q8WW14 230 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 FAM136AQ96C01 138 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 LRRC37BQ96QE4 947 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 GDF15Q99988 308 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 ZNF577Q9BSK1 485 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 ANAPC5Q9UJX4 755 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 TRIM33Q9UPN9 1127 aa10.88□□□□□ -0.67
UPF3B-201ENST00000276201 H3BRB1 525 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 C2CD2LO14523 706 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 SPOPO43791 374 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 T-ENOLP0DO92 83 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 ITGA8P53708 1063 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 RAD23BP54727 409 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 ACTR2P61160 394 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 KLC1Q07866 573 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 CCDC25Q86WR0 208 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 VSIG1Q86XK7 387 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 MYCT1Q8N699 235 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 SEPT1Q8WYJ6 367 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 IFT43Q96FT9 208 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 PCDHB18PQ96TA0 734 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 NUP85Q9BW27 656 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 PHACTR1Q9C0D0 580 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 VCXQ9H320 206 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 TUT1Q9H6E5 874 aaKnown RBP10.87□□□□□ -0.67
UPF3B-201ENST00000276201 STOML1Q9UBI4 398 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 COLQQ9Y215 455 aaPredicted RBP10.87□□□□□ -0.67
UPF3B-201ENST00000276201 EME2A4GXA9 379 aaPredicted RBP10.87□□□□□ -0.67
UPF3B-201ENST00000276201 DPPA5A6NC42 116 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 DDX39AO00148 427 aaKnown RBP10.87□□□□□ -0.67
UPF3B-201ENST00000276201 NMT1P30419 496 aaKnown RBP10.87□□□□□ -0.67
UPF3B-201ENST00000276201 HIC1Q14526 733 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 CCNG2Q16589 344 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 ARHGAP44Q17R89 818 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 FAM91A1Q658Y4 838 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 GDF6Q6KF10 455 aaPredicted RBP10.87□□□□□ -0.67
UPF3B-201ENST00000276201 MTHFD1LQ6UB35 978 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 CYP4X1Q8N118 509 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 ZCCHC9Q8N567 271 aaKnown RBP10.87□□□□□ -0.67
UPF3B-201ENST00000276201 C7orf31Q8N865 590 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 SPDYE1Q8NFV5 336 aaPredicted RBP10.87□□□□□ -0.67
UPF3B-201ENST00000276201 DNAJC9Q8WXX5 260 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 SHC3Q92529 594 aa10.87□□□□□ -0.67
UPF3B-201ENST00000276201 BADQ92934 168 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms