RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 IRAK1P51617 712 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 PTPAQ15257 358 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 ZNF229Q9UJW7 825 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 CAPN6Q9Y6Q1 641 aa11.93□□□□□ -0.5
USP53-201ENST00000274030 MZF1P28698 734 aaPredicted RBP11.92□□□□□ -0.5
USP53-201ENST00000274030 NPTX2P47972 431 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 RGS4P49798 205 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 DNAL1Q4LDG9 190 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 ZNF555Q8NEP9 628 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.92□□□□□ -0.5
USP53-201ENST00000274030 CRLS1Q9UJA2 301 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 ARL4DP49703 201 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 TOB1P50616 345 aaPredicted RBP11.92□□□□□ -0.5
USP53-201ENST00000274030 CDH18Q13634 790 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 AGBL2Q5U5Z8 902 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 CALML6Q8TD86 181 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 RUBCNQ92622 972 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 THAP11Q96EK4 314 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 PNKPQ96T60 521 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 GTF3C4Q9UKN8 822 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 GLRBP48167 497 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 GEMIN4P57678 1058 aaKnown RBP11.92□□□□□ -0.5
USP53-201ENST00000274030 AARS2Q5JTZ9 985 aaKnown RBP11.92□□□□□ -0.5
USP53-201ENST00000274030 ZNF677Q86XU0 584 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 PCYOX1LQ8NBM8 494 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 GPRASP2Q96D09 838 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 GLT1D1Q96MS3 346 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 ZSWIM1Q9BR11 485 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 ASCC2Q9H1I8 757 aaPredicted RBP11.92□□□□□ -0.5
USP53-201ENST00000274030 ERCC6L2Q5T890 1561 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 C17orf102A2RUQ5 167 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 STX7O15400 261 aaKnown RBP11.92□□□□□ -0.5
USP53-201ENST00000274030 P4HA2O15460 535 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 CENPCQ03188 943 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 FUT11Q495W5 492 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 NAPEPLDQ6IQ20 393 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 EMC1Q8N766 993 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 KCNK16Q96T55 309 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 MAP3K14Q99558 947 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 OSGEPQ9NPF4 335 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 SPASTQ9UBP0 616 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 PLAGL2Q9UPG8 496 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 SPTLC1O15269 473 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 OGTO15294 1046 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 ALDH7A1P49419 539 aaKnown RBP11.92□□□□□ -0.5
USP53-201ENST00000274030 CPT1AP50416 773 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 NME5P56597 212 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 POU4F1Q01851 419 aa11.92□□□□□ -0.5
USP53-201ENST00000274030 EZH2Q15910 746 aaKnown RBP11.92□□□□□ -0.5
USP53-201ENST00000274030 CINPQ9BW66 212 aaPredicted RBP11.92□□□□□ -0.5
USP53-201ENST00000274030 NFIBO00712 420 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 RALBP11234 206 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 TARSP26639 723 aaKnown RBP11.91□□□□□ -0.5
USP53-201ENST00000274030 BOLA3Q53S33 107 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 REXO1L1PQ8IX06 675 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 OLFM3Q96PB7 478 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 SMAD5Q99717 465 aaKnown RBP11.91□□□□□ -0.5
USP53-201ENST00000274030 SEMA6BQ9H3T3 888 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 DDX28Q9NUL7 540 aaKnown RBP11.91□□□□□ -0.5
USP53-201ENST00000274030 RRN3P2A6NIE6 340 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 DDHD2O94830 711 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 SUPT7LO94864 414 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 TRIM16O95361 564 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 CLEC16AQ2KHT3 1053 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 FAM131BQ86XD5 332 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 AGGF1Q8N302 714 aaeCLIP11.91□□□□□ -0.56e-9■■■□□ 16.6
USP53-201ENST00000274030 CMTM5Q96DZ9 223 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 CHST12Q9NRB3 414 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 CACNA2D2Q9NY47 1150 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 UBQLN1Q9UMX0 589 aaKnown RBP11.91□□□□□ -0.5
USP53-201ENST00000274030 MRPL42Q9Y6G3 142 aaKnown RBP11.91□□□□□ -0.5
USP53-201ENST00000274030 QRICH2Q9H0J4 1663 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 RASSF10A6NK89 507 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 IGF2BP3O00425 579 aaKnown RBP eCLIP11.91□□□□□ -0.5
USP53-201ENST00000274030 CYP11B1P15538 503 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 PPP4CP60510 307 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 GIT2Q14161 759 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 TDRD10Q5VZ19 366 aaKnown RBP11.91□□□□□ -0.5
USP53-201ENST00000274030 INTS5Q6P9B9 1019 aaKnown RBP11.91□□□□□ -0.5
USP53-201ENST00000274030 TBC1D19Q8N5T2 526 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 EXOSC4Q9NPD3 245 aaKnown RBP11.91□□□□□ -0.5
USP53-201ENST00000274030 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.91□□□□□ -0.5
USP53-201ENST00000274030 RNF17Q9BXT8 1623 aaKnown RBP11.91□□□□□ -0.5
USP53-201ENST00000274030 DDTLA6NHG4 134 aaPredicted RBP11.91□□□□□ -0.5
USP53-201ENST00000274030 XPO1O14980 1071 aaKnown RBP11.91□□□□□ -0.5
USP53-201ENST00000274030 KLHL2O95198 593 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 UBTFL6P0CB48 400 aaPredicted RBP11.91□□□□□ -0.5
USP53-201ENST00000274030 RRM1P23921 792 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 STYK1Q6J9G0 422 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 C16orf89Q6UX73 402 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 ADGRA1Q86SQ6 560 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 MMGT1Q8N4V1 131 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 FBXO36Q8NEA4 188 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 TAS1R2Q8TE23 839 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 ROPN1BQ9BZX4 212 aaPredicted RBP11.91□□□□□ -0.5
USP53-201ENST00000274030 ROPN1Q9HAT0 212 aaPredicted RBP11.91□□□□□ -0.5
USP53-201ENST00000274030 USP20Q9Y2K6 914 aa11.91□□□□□ -0.5
USP53-201ENST00000274030 MTO1Q9Y2Z2 717 aaKnown RBP11.91□□□□□ -0.5
USP53-201ENST00000274030 HEATR9A2RTY3 570 aa11.9□□□□□ -0.5
USP53-201ENST00000274030 CFAP99D6REC4 459 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms