RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 DNERQ8NFT8 737 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 NIFKQ9BYG3 293 aaKnown RBP17.48■□□□□ 0.39
VPS54-201ENST00000272322 CPSF3Q9UKF6 684 aaKnown RBP17.48■□□□□ 0.39
VPS54-201ENST00000272322 USP15Q9Y4E8 981 aaPredicted RBP17.48■□□□□ 0.39
VPS54-201ENST00000272322 ATG7O95352 703 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 CDH6P55285 790 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 RNASELQ05823 741 aaKnown RBP17.48■□□□□ 0.39
VPS54-201ENST00000272322 TRIM72Q6ZMU5 477 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 CTAGE3PQ8IX95 158 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 PARP9Q8IXQ6 854 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.48■□□□□ 0.39
VPS54-201ENST00000272322 TMEM237Q96Q45 408 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 B3GNT5Q9BYG0 378 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 ECT2Q9H8V3 914 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 COL11A1P12107 1806 aaPredicted RBP17.48■□□□□ 0.39
VPS54-201ENST00000272322 C5orf60A6NFR6 353 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 RBP3P10745 1247 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 MIPP30301 263 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 CDKN2BP42772 138 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 PHKA2P46019 1235 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 IER5Q5VY09 327 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 SPATA21Q7Z572 469 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 PALM2Q8IXS6 379 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 FITM2Q8N6M3 262 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 SPATA18Q8TC71 538 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 C12orf42Q96LP6 360 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 XYLT2Q9H1B5 865 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.48■□□□□ 0.39
VPS54-201ENST00000272322 SIX4Q9UIU6 781 aa17.48■□□□□ 0.39
VPS54-201ENST00000272322 MRPL42Q9Y6G3 142 aaKnown RBP17.48■□□□□ 0.39
VPS54-201ENST00000272322 ZNF646O15015 1829 aaPredicted RBP17.47■□□□□ 0.39
VPS54-201ENST00000272322 ZBTB42B2RXF5 422 aa17.47■□□□□ 0.39
VPS54-201ENST00000272322 H7C0C1 242 aa17.47■□□□□ 0.39
VPS54-201ENST00000272322 DNALI1O14645 258 aaPredicted RBP17.47■□□□□ 0.39
VPS54-201ENST00000272322 ASAP2O43150 1006 aa17.47■□□□□ 0.39
VPS54-201ENST00000272322 ATP5OP48047 213 aa17.47■□□□□ 0.39
VPS54-201ENST00000272322 PIGWQ7Z7B1 504 aa17.47■□□□□ 0.39
VPS54-201ENST00000272322 SCUBE3Q8IX30 993 aa17.47■□□□□ 0.39
VPS54-201ENST00000272322 SLC16A10Q8TF71 515 aa17.47■□□□□ 0.39
VPS54-201ENST00000272322 KLHL29Q96CT2 875 aa17.47■□□□□ 0.39
VPS54-201ENST00000272322 MMP19Q99542 508 aa17.47■□□□□ 0.39
VPS54-201ENST00000272322 ROPN1BQ9BZX4 212 aaPredicted RBP17.47■□□□□ 0.39
VPS54-201ENST00000272322 ROPN1Q9HAT0 212 aaPredicted RBP17.47■□□□□ 0.39
VPS54-201ENST00000272322 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.47■□□□□ 0.39
VPS54-201ENST00000272322 MAGED2Q9UNF1 606 aaPredicted RBP17.47■□□□□ 0.39
VPS54-201ENST00000272322 PDGFRBP09619 1106 aa17.47■□□□□ 0.39
VPS54-201ENST00000272322 HIF1AQ16665 826 aa17.47■□□□□ 0.39
VPS54-201ENST00000272322 KIZQ2M2Z5 673 aa17.47■□□□□ 0.39
VPS54-201ENST00000272322 BSPRYQ5W0U4 402 aa17.47■□□□□ 0.39
VPS54-201ENST00000272322 MPZL3Q6UWV2 235 aa17.47■□□□□ 0.39
VPS54-201ENST00000272322 CFAP57Q96MR6 1250 aa17.47■□□□□ 0.39
VPS54-201ENST00000272322 ADPGKQ9BRR6 497 aa17.47■□□□□ 0.39
VPS54-201ENST00000272322 ELOVL4Q9GZR5 314 aa17.47■□□□□ 0.39
VPS54-201ENST00000272322 SUN1O94901 812 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 MAN1A1P33908 653 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 RFC5P40937 340 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 ATXN1P54253 815 aaKnown RBP17.46■□□□□ 0.39
VPS54-201ENST00000272322 YWHAGP61981 247 aaKnown RBP eCLIP17.46■□□□□ 0.39
VPS54-201ENST00000272322 SLC1A5Q15758 541 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 MAP1SQ66K74 1059 aaPredicted RBP17.46■□□□□ 0.39
VPS54-201ENST00000272322 DARS2Q6PI48 645 aaKnown RBP17.46■□□□□ 0.39
VPS54-201ENST00000272322 YTHDF3Q7Z739 585 aaKnown RBP17.46■□□□□ 0.39
VPS54-201ENST00000272322 MAK16Q9BXY0 300 aaKnown RBP17.46■□□□□ 0.39
VPS54-201ENST00000272322 VPS33BQ9H267 617 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 RBPJLQ9UBG7 517 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 KIF13BQ9NQT8 1826 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 IGF2BP3O00425 579 aaKnown RBP eCLIP17.46■□□□□ 0.39
VPS54-201ENST00000272322 FAM189A1O60320 539 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 CDC25CP30307 473 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 EFNA5P52803 228 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 VCPP55072 806 aaKnown RBP17.46■□□□□ 0.39
VPS54-201ENST00000272322 EIF3EP60228 445 aaKnown RBP17.46■□□□□ 0.39
VPS54-201ENST00000272322 ALLCQ8N6M5 410 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 TMEM174Q8WUU8 243 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 AFG1LQ8WV93 481 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 PPEF2O14830 753 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 FAM155BO75949 473 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 RNF8O76064 485 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 IRX4P78413 519 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 SNCBQ16143 134 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 HHATQ5VTY9 493 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 ACOT1Q86TX2 421 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 RIOX2Q8IUF8 465 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 FBXO36Q8NEA4 188 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 CFAP36Q96G28 342 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 SMC6Q96SB8 1091 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 GRID1Q9ULK0 1009 aa17.46■□□□□ 0.39
VPS54-201ENST00000272322 E5RJQ4 531 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 RASSF9O75901 435 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 PDGFRAP16234 1089 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 RPL22P35268 128 aaKnown RBP17.45■□□□□ 0.38
VPS54-201ENST00000272322 RAD23BP54727 409 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 MYO1EQ12965 1108 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 ZC3H12AQ5D1E8 599 aaKnown RBP17.45■□□□□ 0.38
VPS54-201ENST00000272322 CELF3Q5SZQ8 465 aaKnown RBP17.45■□□□□ 0.38
VPS54-201ENST00000272322 VSIG1Q86XK7 387 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.45■□□□□ 0.38
VPS54-201ENST00000272322 SNX9Q9Y5X1 595 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 MICAL2O94851 1124 aa17.45■□□□□ 0.38
VPS54-201ENST00000272322 ADCYAP1R1P41586 468 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms