RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 GRIK1P39086 918 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 TECP42680 631 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ZAP70P43403 619 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 KIAA1841Q6NSI8 718 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 FOXR1Q6PIV2 292 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 SMYD4Q8IYR2 804 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ULK2Q8IYT8 1036 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 TMEM120AQ9BXJ8 343 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 LNPEPQ9UIQ6 1025 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 OVOS2A0A0J9YW53 1432 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 OVOS2Q6IE36 1432 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 MLH3Q9UHC1 1453 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ARAP3Q8WWN8 1544 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 FCHO1O14526 889 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 CLOCKO15516 846 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 NCK2O43639 380 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 UCHL3P15374 230 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 BCAP31P51572 246 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 CENPPQ6IPU0 288 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 OR7A2PQ8NGA2 310 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF420Q8TAQ5 688 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 RAB2BQ8WUD1 216 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 COG4Q9H9E3 785 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 CD320Q9NPF0 282 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 HPS4Q9NQG7 708 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 SLC5A4Q9NY91 659 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 SELENONQ9NZV5 590 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 LRRC42Q9Y546 428 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 SF3B1O75533 1304 aaKnown RBP eCLIP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 E9PCH4 1651 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 KLRF2D3W0D1 207 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ZBED4O75132 1171 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 SKAP2O75563 359 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 FARP2O94887 1054 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 NPR3P17342 541 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 NFKBIAP25963 317 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 FMR1Q06787 632 aaKnown RBP eCLIP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 SPIRE1Q08AE8 756 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 COASYQ13057 564 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 CTTNQ14247 550 aaKnown RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 CCNG2Q16589 344 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 CATSPER3Q86XQ3 398 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 DHRSXQ8N5I4 330 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 RDH13Q8NBN7 331 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 CHURC1Q8WUH1 139 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF512BQ96KM6 892 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 THAP1Q9NVV9 213 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 GDAQ9Y2T3 454 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 USP6P35125 1406 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 POLR2MP0CAP2 368 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ALOX15P16050 662 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ZBTB38Q8NAP3 1195 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 BIRC8Q96P09 236 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 TBC1D10AQ9BXI6 508 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 BARX2Q9UMQ3 279 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 KIAA1024Q9UPX6 916 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 MAP3K4Q9Y6R4 1608 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 CLUHO75153 1309 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 C1orf232A0A0U1RR37 186 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF701M0R085 212 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ALDH1A3P47895 512 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 GALCP54803 685 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 DAB2P98082 770 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 AMNQ9BXJ7 453 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 AGXT2Q9BYV1 514 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 CAPN6Q9Y6Q1 641 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 EFCAB6Q5THR3 1501 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 MTRF1O75570 445 aaKnown RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 MYCP01106 439 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 LDLRP01130 860 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 FAM228BP0C875 321 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 FECHP22830 423 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ITGA6P23229 1130 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 PMLP29590 882 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 PRAMEP78395 509 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 CHRNB3Q05901 458 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 IDI1Q13907 227 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 TFDP1Q14186 410 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 KYAT1Q16773 422 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 METTL21CQ5VZV1 264 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 TMC4Q7Z404 712 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 PPM1NQ8N819 430 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 APEX2Q9UBZ4 518 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 SERPINB13Q9UIV8 391 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 A0A1W2PRG6 482 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 TRAFD1O14545 582 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 JAK3P52333 1124 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 NR5A1Q13285 461 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ARHGEF6Q15052 776 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 PLEKHM3Q6ZWE6 761 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 ADGRG6Q86SQ4 1221 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 C19orf18Q8NEA5 215 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 EXD1Q8NHP7 514 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 RDH11Q8TC12 318 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 NLRP3Q96P20 1036 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 UBE2OQ9C0C9 1292 aaKnown RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 CDV3Q9UKY7 258 aaKnown RBP4.85□□□□□ -1.63
SCN1A-220ENST00000641603 UNC13AQ9UPW8 1703 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 PPP1R3GB7ZBB8 358 aa4.85□□□□□ -1.63
SCN1A-220ENST00000641603 H0YJX3 145 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms