RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 FXR2P51116 673 aaKnown RBP eCLIP17.71■□□□□ 0.43
CLN3-264ENST00000637985 BFSP1Q12934 665 aa17.71■□□□□ 0.43
CLN3-264ENST00000637985 SLC10A6Q3KNW5 377 aa17.71■□□□□ 0.43
CLN3-264ENST00000637985 HAUS3Q68CZ6 603 aa17.71■□□□□ 0.43
CLN3-264ENST00000637985 CC2D1AQ6P1N0 951 aaPredicted RBP17.71■□□□□ 0.43
CLN3-264ENST00000637985 CCNI2Q6ZMN8 369 aaPredicted RBP17.71■□□□□ 0.43
CLN3-264ENST00000637985 LPCAT2Q7L5N7 544 aa17.71■□□□□ 0.43
CLN3-264ENST00000637985 TMEM150AQ86TG1 271 aa17.71■□□□□ 0.43
CLN3-264ENST00000637985 TMEM130Q8N3G9 435 aa17.71■□□□□ 0.43
CLN3-264ENST00000637985 HDDC3Q8N4P3 179 aa17.71■□□□□ 0.43
CLN3-264ENST00000637985 C4orf32Q8N8J7 132 aa17.71■□□□□ 0.43
CLN3-264ENST00000637985 CCDC26Q8TAB7 109 aa17.71■□□□□ 0.43
CLN3-264ENST00000637985 USP33Q8TEY7 942 aa17.71■□□□□ 0.43
CLN3-264ENST00000637985 FNBP1Q96RU3 617 aa17.71■□□□□ 0.43
CLN3-264ENST00000637985 ECT2Q9H8V3 914 aa17.71■□□□□ 0.43
CLN3-264ENST00000637985 KIF9Q9HAQ2 790 aa17.71■□□□□ 0.43
CLN3-264ENST00000637985 STK24Q9Y6E0 443 aa17.71■□□□□ 0.43
CLN3-264ENST00000637985 NAV2Q8IVL1 2488 aa17.7■□□□□ 0.42
CLN3-264ENST00000637985 ARHGEF35A5YM69 484 aa17.7■□□□□ 0.42
CLN3-264ENST00000637985 LRPAP1P30533 357 aa17.7■□□□□ 0.42
CLN3-264ENST00000637985 TUFMP49411 452 aaKnown RBP17.7■□□□□ 0.42
CLN3-264ENST00000637985 HNRNPDQ14103 355 aaKnown RBP17.7■□□□□ 0.42
CLN3-264ENST00000637985 PDIA5Q14554 519 aa17.7■□□□□ 0.42
CLN3-264ENST00000637985 VEPH1Q14D04 833 aa17.7■□□□□ 0.42
CLN3-264ENST00000637985 PEAR1Q5VY43 1037 aaPredicted RBP17.7■□□□□ 0.42
CLN3-264ENST00000637985 OVOS1Q6IE37 1185 aa17.7■□□□□ 0.42
CLN3-264ENST00000637985 CPA6Q8N4T0 437 aa17.7■□□□□ 0.42
CLN3-264ENST00000637985 MAB21L3Q8N8X9 362 aa17.7■□□□□ 0.42
CLN3-264ENST00000637985 KIFAP3Q92845 792 aa17.7■□□□□ 0.42
CLN3-264ENST00000637985 LRIG1Q96JA1 1093 aa17.7■□□□□ 0.42
CLN3-264ENST00000637985 TARS2Q9BW92 718 aaKnown RBP17.7■□□□□ 0.42
CLN3-264ENST00000637985 MRPL4Q9BYD3 311 aaKnown RBP17.7■□□□□ 0.42
CLN3-264ENST00000637985 URB1O60287 2271 aaKnown RBP17.7■□□□□ 0.42
CLN3-264ENST00000637985 ADAMTS9Q9P2N4 1935 aa17.7■□□□□ 0.42
CLN3-264ENST00000637985 PHLPP2Q6ZVD8 1323 aa17.7■□□□□ 0.42
CLN3-264ENST00000637985 KALRNO60229 2985 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 LAD1O00515 517 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 TYMPP19971 482 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 DDX6P26196 483 aaKnown RBP eCLIP17.69■□□□□ 0.42
CLN3-264ENST00000637985 P2RY2P41231 377 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 DPP6P42658 865 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 SPDYCQ5MJ68 293 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 ARMCX5Q6P1M9 558 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 ARMCX6Q7L4S7 300 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 TMEFF1Q8IYR6 380 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 ADAMTS14Q8WXS8 1223 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 TMX3Q96JJ7 454 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 SEPT5Q99719 369 aaPredicted RBP17.69■□□□□ 0.42
CLN3-264ENST00000637985 TCHPQ9BT92 498 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 RAB34Q9BZG1 259 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 TMEM134Q9H6X4 195 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 LRWD1Q9UFC0 647 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 PILRBQ9UKJ0 227 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 RAXQ9Y2V3 346 aa17.69■□□□□ 0.42
CLN3-264ENST00000637985 OPHN1O60890 802 aa17.68■□□□□ 0.42
CLN3-264ENST00000637985 F11P03951 625 aa17.68■□□□□ 0.42
CLN3-264ENST00000637985 CD59P13987 128 aa17.68■□□□□ 0.42
CLN3-264ENST00000637985 HOXD12P35452 270 aa17.68■□□□□ 0.42
CLN3-264ENST00000637985 TOB1P50616 345 aaPredicted RBP17.68■□□□□ 0.42
CLN3-264ENST00000637985 ZNF268Q14587 947 aaPredicted RBP17.68■□□□□ 0.42
CLN3-264ENST00000637985 CRY1Q16526 586 aa17.68■□□□□ 0.42
CLN3-264ENST00000637985 MGAT5BQ3V5L5 792 aa17.68■□□□□ 0.42
CLN3-264ENST00000637985 MPZL3Q6UWV2 235 aa17.68■□□□□ 0.42
CLN3-264ENST00000637985 TAS1R3Q7RTX0 852 aa17.68■□□□□ 0.42
CLN3-264ENST00000637985 MDM1Q8TC05 714 aa17.68■□□□□ 0.42
CLN3-264ENST00000637985 RLN3Q8WXF3 142 aa17.68■□□□□ 0.42
CLN3-264ENST00000637985 FSCN3Q9NQT6 498 aa17.68■□□□□ 0.42
CLN3-264ENST00000637985 MMP17Q9ULZ9 603 aa17.68■□□□□ 0.42
CLN3-264ENST00000637985 SLC6A14Q9UN76 642 aa17.68■□□□□ 0.42
CLN3-264ENST00000637985 K7EQS6 105 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 MAP3K13O43283 966 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 CFIP05156 583 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 NMT1P30419 496 aaKnown RBP17.67■□□□□ 0.42
CLN3-264ENST00000637985 CCT6AP40227 531 aaKnown RBP17.67■□□□□ 0.42
CLN3-264ENST00000637985 NPTX2P47972 431 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 ATXN3P54252 364 aaPredicted RBP17.67■□□□□ 0.42
CLN3-264ENST00000637985 NLRP12P59046 1061 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 C19orf57Q0VDD7 668 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 NBR1Q14596 966 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 ZBTB6Q15916 424 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 C2orf27AQ580R0 203 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 LYSMD4Q5XG99 296 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 TXNDC8Q6A555 127 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 DSTYKQ6XUX3 929 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 FRMD1Q8N878 549 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 IGSF22Q8N9C0 903 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 OR10T2Q8NGX3 314 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 OSCP1Q8WVF1 389 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 GTPBP2Q9BX10 602 aaKnown RBP17.67■□□□□ 0.42
CLN3-264ENST00000637985 CAPN10Q9HC96 672 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 PCDHB6Q9Y5E3 794 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 PCDH15Q96QU1 1955 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 OBSL1O75147 1896 aa17.67■□□□□ 0.42
CLN3-264ENST00000637985 PLXND1Q9Y4D7 1925 aa17.66■□□□□ 0.42
CLN3-264ENST00000637985 ANTXRLA6NF34 631 aa17.66■□□□□ 0.42
CLN3-264ENST00000637985 CCDC169A6NNP5 214 aa17.66■□□□□ 0.42
CLN3-264ENST00000637985 HNRNPLP14866 589 aaKnown RBP eCLIP17.66■□□□□ 0.42
CLN3-264ENST00000637985 HMGA1P17096 107 aaKnown RBP17.66■□□□□ 0.42
CLN3-264ENST00000637985 ITPKAP23677 461 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms