RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 MMS19Q96T76 1030 aa19.41■□□□□ 0.7
CLN3-243ENST00000635973 DNMT3BQ9UBC3 853 aaKnown RBP19.41■□□□□ 0.7
CLN3-243ENST00000635973 USP34Q70CQ2 3546 aa19.41■□□□□ 0.7
CLN3-243ENST00000635973 WDR27A2RRH5 827 aa19.4■□□□□ 0.7
CLN3-243ENST00000635973 KRBA1A5PL33 1030 aa19.4■□□□□ 0.7
CLN3-243ENST00000635973 PI15O43692 258 aa19.4■□□□□ 0.7
CLN3-243ENST00000635973 HLA-DRAP01903 254 aa19.4■□□□□ 0.7
CLN3-243ENST00000635973 CYP11A1P05108 521 aa19.4■□□□□ 0.7
CLN3-243ENST00000635973 CPB1P15086 417 aa19.4■□□□□ 0.7
CLN3-243ENST00000635973 ATF2P15336 505 aa19.4■□□□□ 0.7
CLN3-243ENST00000635973 PARM1Q6UWI2 310 aa19.4■□□□□ 0.7
CLN3-243ENST00000635973 THEM5Q8N1Q8 247 aa19.4■□□□□ 0.7
CLN3-243ENST00000635973 TOP6BLQ8N6T0 577 aa19.4■□□□□ 0.7
CLN3-243ENST00000635973 FGF14Q92915 247 aa19.4■□□□□ 0.7
CLN3-243ENST00000635973 SHDQ96IW2 340 aa19.4■□□□□ 0.7
CLN3-243ENST00000635973 CNOT6LQ96LI5 555 aaKnown RBP19.4■□□□□ 0.7
CLN3-243ENST00000635973 OXCT2Q9BYC2 517 aaPredicted RBP19.4■□□□□ 0.7
CLN3-243ENST00000635973 TBC1D17Q9HA65 648 aa19.4■□□□□ 0.7
CLN3-243ENST00000635973 ARHGEF3Q9NR81 526 aa19.4■□□□□ 0.7
CLN3-243ENST00000635973 SLC2A4RGQ9NR83 387 aa19.4■□□□□ 0.7
CLN3-243ENST00000635973 GDAP2Q9NXN4 497 aa19.4■□□□□ 0.7
CLN3-243ENST00000635973 NXF1Q9UBU9 619 aaKnown RBP19.4■□□□□ 0.7
CLN3-243ENST00000635973 FBXL5Q9UKA1 691 aa19.4■□□□□ 0.7
CLN3-243ENST00000635973 OR6C75A6NL08 312 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 ABLIM3O94929 683 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 OAZ2O95190 189 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 VNN1O95497 513 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 MRPL58Q14197 206 aaKnown RBP19.39■□□□□ 0.69
CLN3-243ENST00000635973 SGSM1Q2NKQ1 1148 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 WDR72Q3MJ13 1102 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 ZNF667Q5HYK9 610 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 TPGS2Q68CL5 300 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 C11orf57Q6ZUT1 292 aaPredicted RBP19.39■□□□□ 0.69
CLN3-243ENST00000635973 FAM114A1Q8IWE2 563 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 CCDC105Q8IYK2 499 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 ADGRF2Q8IZF7 708 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 TMEM86AQ8N2M4 240 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 PDCL2Q8N4E4 241 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 DTWD2Q8NBA8 298 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 TAS1R2Q8TE23 839 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 ING5Q8WYH8 240 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 MAGEC2Q9UBF1 373 aaPredicted RBP19.39■□□□□ 0.69
CLN3-243ENST00000635973 L1RE1Q9UN81 338 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 NOTCH4Q99466 2003 aa19.39■□□□□ 0.69
CLN3-243ENST00000635973 STAU1O95793 577 aaKnown RBP19.38■□□□□ 0.69
CLN3-243ENST00000635973 RHOP08100 348 aa19.38■□□□□ 0.69
CLN3-243ENST00000635973 P4HA1P13674 534 aa19.38■□□□□ 0.69
CLN3-243ENST00000635973 TSC2P49815 1807 aa19.38■□□□□ 0.69
CLN3-243ENST00000635973 MYL7Q01449 175 aa19.38■□□□□ 0.69
CLN3-243ENST00000635973 NFKBIBQ15653 356 aa19.38■□□□□ 0.69
CLN3-243ENST00000635973 IQCEQ6IPM2 695 aa19.38■□□□□ 0.69
CLN3-243ENST00000635973 SCARA5Q6ZMJ2 495 aa19.38■□□□□ 0.69
CLN3-243ENST00000635973 NPAS3Q8IXF0 933 aa19.38■□□□□ 0.69
CLN3-243ENST00000635973 TCEAL8Q8IYN2 117 aa19.38■□□□□ 0.69
CLN3-243ENST00000635973 SLC35C1Q96A29 364 aa19.38■□□□□ 0.69
CLN3-243ENST00000635973 MCRS1Q96EZ8 462 aa19.38■□□□□ 0.69
CLN3-243ENST00000635973 MED15Q96RN5 788 aa19.38■□□□□ 0.69
CLN3-243ENST00000635973 CORO1BQ9BR76 489 aa19.38■□□□□ 0.69
CLN3-243ENST00000635973 RPP25Q9BUL9 199 aaKnown RBP19.38■□□□□ 0.69
CLN3-243ENST00000635973 NAT10Q9H0A0 1025 aaKnown RBP19.38■□□□□ 0.69
CLN3-243ENST00000635973 XYLT2Q9H1B5 865 aa19.38■□□□□ 0.69
CLN3-243ENST00000635973 DNAJC25Q9H1X3 360 aa19.38■□□□□ 0.69
CLN3-243ENST00000635973 THAP9Q9H5L6 903 aa19.38■□□□□ 0.69
CLN3-243ENST00000635973 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.38■□□□□ 0.696e-9■■■■■ 134.6
CLN3-243ENST00000635973 SIT1Q9Y3P8 196 aa19.38■□□□□ 0.69
CLN3-243ENST00000635973 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.38■□□□□ 0.69
CLN3-243ENST00000635973 SYCE3A1L190 88 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 ZNF197O14709 1029 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 MTIF2P46199 727 aaKnown RBP19.37■□□□□ 0.69
CLN3-243ENST00000635973 MARSP56192 900 aaKnown RBP19.37■□□□□ 0.69
CLN3-243ENST00000635973 GPC5P78333 572 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 PFKPQ01813 784 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 ADCY1Q08828 1119 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 CBWD6Q4V339 395 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 CBWD3Q5JTY5 395 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 CBWD5Q5RIA9 395 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 CYP4A22Q5TCH4 519 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 PHLDB3Q6NSJ2 640 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 FBXL13Q8NEE6 735 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 TAF4BQ92750 862 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 ZNF512Q96ME7 567 aaPredicted RBP19.37■□□□□ 0.69
CLN3-243ENST00000635973 KXD1Q9BQD3 176 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 PI4K2AQ9BTU6 479 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 DDX43Q9NXZ2 648 aaKnown RBP19.37■□□□□ 0.69
CLN3-243ENST00000635973 GDE1Q9NZC3 331 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 MAFFQ9ULX9 164 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 INSL5Q9Y5Q6 135 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 CACNA1HO95180 2353 aa19.37■□□□□ 0.69
CLN3-243ENST00000635973 ZFHX2Q9C0A1 2572 aaPredicted RBP19.36■□□□□ 0.69
CLN3-243ENST00000635973 MIA3Q5JRA6 1907 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 TBC1D4O60343 1298 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 OR4Q2P0C623 313 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 LHX1P48742 406 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 FMO5P49326 533 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 MCCD1P59942 119 aaPredicted RBP19.36■□□□□ 0.69
CLN3-243ENST00000635973 NOP14P78316 857 aaKnown RBP19.36■□□□□ 0.69
CLN3-243ENST00000635973 TSPY1Q01534 308 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 CETN1Q12798 172 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 ANGPT1Q15389 498 aa19.36■□□□□ 0.69
CLN3-243ENST00000635973 SOWAHAQ2M3V2 549 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms