RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 NIF3L1Q9GZT8 377 aa19.33■□□□□ 0.68
CLN3-239ENST00000628023 ZCWPW1Q9H0M4 648 aa19.33■□□□□ 0.68
CLN3-239ENST00000628023 IRF2BPLQ9H1B7 796 aa19.33■□□□□ 0.68
CLN3-239ENST00000628023 SAMSN1Q9NSI8 373 aaKnown RBP19.33■□□□□ 0.68
CLN3-239ENST00000628023 AFF4Q9UHB7 1163 aaKnown RBP19.33■□□□□ 0.68
CLN3-239ENST00000628023 KCNJ18B7U540 433 aa19.32■□□□□ 0.68
CLN3-239ENST00000628023 PES1O00541 588 aaKnown RBP19.32■□□□□ 0.68
CLN3-239ENST00000628023 GABRDO14764 452 aa19.32■□□□□ 0.68
CLN3-239ENST00000628023 ABLIM3O94929 683 aa19.32■□□□□ 0.68
CLN3-239ENST00000628023 ATF2P15336 505 aa19.32■□□□□ 0.68
CLN3-239ENST00000628023 GNL1P36915 607 aaPredicted RBP19.32■□□□□ 0.68
CLN3-239ENST00000628023 ADCY1Q08828 1119 aa19.32■□□□□ 0.68
CLN3-239ENST00000628023 GPR17Q13304 367 aa19.32■□□□□ 0.68
CLN3-239ENST00000628023 KCNJ12Q14500 433 aa19.32■□□□□ 0.68
CLN3-239ENST00000628023 INTS6LQ5JSJ4 861 aaKnown RBP19.32■□□□□ 0.68
CLN3-239ENST00000628023 IER5LQ5T953 404 aa19.32■□□□□ 0.68
CLN3-239ENST00000628023 GPR149Q86SP6 731 aa19.32■□□□□ 0.68
CLN3-239ENST00000628023 IRF2BP1Q8IU81 584 aa19.32■□□□□ 0.68
CLN3-239ENST00000628023 AOPEPQ8N6M6 819 aa19.32■□□□□ 0.68
CLN3-239ENST00000628023 SYT15Q9BQS2 421 aa19.32■□□□□ 0.68
CLN3-239ENST00000628023 APOBEC3GQ9HC16 384 aaKnown RBP19.32■□□□□ 0.68
CLN3-239ENST00000628023 MYO10Q9HD67 2058 aa19.32■□□□□ 0.68
CLN3-239ENST00000628023 A8MXQ7 604 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 P4HA2O15460 535 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 HCRTO43612 131 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 RFPL2O75678 378 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 ZMYND10O75800 440 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 PDGFRBP09619 1106 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 FAM163BP0C2L3 166 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 EEF1GP26641 437 aaKnown RBP19.31■□□□□ 0.68
CLN3-239ENST00000628023 AVPR2P30518 371 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 ASPAP45381 313 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 CDH8P55286 799 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 PSMC1P62191 440 aaKnown RBP19.31■□□□□ 0.68
CLN3-239ENST00000628023 MAN2A1Q16706 1144 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 OTOP3Q7RTS5 596 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 LIMS2Q7Z4I7 341 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 ANKRD20A12PQ8NF67 263 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 PIDD1Q9HB75 910 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 ZDHHC7Q9NXF8 308 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 ABI2Q9NYB9 513 aaPredicted RBP19.31■□□□□ 0.68
CLN3-239ENST00000628023 LIMD1Q9UGP4 676 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 CDH9Q9ULB4 789 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 MAFFQ9ULX9 164 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 COQ4Q9Y3A0 265 aa19.31■□□□□ 0.68
CLN3-239ENST00000628023 WDFY4Q6ZS81 3184 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 CCDC195A0A1B0GUA6 201 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 MTMR11A4FU01 709 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 PMM2O15305 246 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 LRRN2O75325 713 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 LRG1P02750 347 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 TPM2P07951 284 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 TRIM21P19474 475 aaKnown RBP19.3■□□□□ 0.68
CLN3-239ENST00000628023 LMO2P25791 158 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 CDR1P51861 262 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 NUBP1P53384 320 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 SMARCB1Q12824 385 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 LRMPQ12912 555 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 NFE2Q16621 373 aaPredicted RBP19.3■□□□□ 0.68
CLN3-239ENST00000628023 TCP11X2Q5H9J9 407 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 PRSS33Q8NF86 280 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 TUBGCP2Q9BSJ2 902 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 SDCBP2Q9H190 292 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 CYP3A43Q9HB55 503 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 FANCLQ9NW38 375 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 GCNT4Q9P109 453 aa19.3■□□□□ 0.68
CLN3-239ENST00000628023 BECN2A8MW95 431 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 CCL16O15467 120 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 CD58P19256 250 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 ZNF165P49910 485 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 DUSP4Q13115 394 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 UVSSAQ2YD98 709 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 MGAT5BQ3V5L5 792 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 CYP26C1Q6V0L0 522 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 RTL10Q7L3V2 364 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 SPATA2LQ8IUW3 424 aaPredicted RBP19.29■□□□□ 0.68
CLN3-239ENST00000628023 TCEAL8Q8IYN2 117 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 ATAD1Q8NBU5 361 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 CMASQ8NFW8 434 aaPredicted RBP19.29■□□□□ 0.68
CLN3-239ENST00000628023 C2orf15Q8WU43 125 aaKnown RBP19.29■□□□□ 0.68
CLN3-239ENST00000628023 SMG7Q92540 1137 aaKnown RBP19.29■□□□□ 0.68
CLN3-239ENST00000628023 NT5C1BQ96P26 610 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 SEPT5Q99719 369 aaPredicted RBP19.29■□□□□ 0.68
CLN3-239ENST00000628023 BPIFA3Q9BQP9 254 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 FUCA2Q9BTY2 467 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 BCO2Q9BYV7 579 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 DNAI2Q9GZS0 605 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 GTF3C4Q9UKN8 822 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 PCDHB5Q9Y5E4 795 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 INSL5Q9Y5Q6 135 aa19.29■□□□□ 0.68
CLN3-239ENST00000628023 MTCL1Q9Y4B5 1905 aaKnown RBP19.29■□□□□ 0.68
CLN3-239ENST00000628023 SMTNL1A8MU46 457 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 XYLBO75191 536 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 SEC24AO95486 1093 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 HNRNPA1P09651 372 aaKnown RBP eCLIP19.28■□□□□ 0.68
CLN3-239ENST00000628023 CDK11BP21127 795 aaKnown RBP19.28■□□□□ 0.68
CLN3-239ENST00000628023 HOXA9P31269 272 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 PLD1Q13393 1074 aa19.28■□□□□ 0.68
CLN3-239ENST00000628023 MAPRE1Q15691 268 aaKnown RBP19.28■□□□□ 0.68
CLN3-239ENST00000628023 VWA3BQ502W6 1294 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms