RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 LRRTM3Q86VH5 581 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 ARHGEF19Q8IW93 802 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 TCEAL8Q8IYN2 117 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 B3GALNT2Q8NCR0 500 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 SLC7A14Q8TBB6 771 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 SPPL2BQ8TCT7 592 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 ABI2Q9NYB9 513 aaPredicted RBP20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 CLEC1BQ9P126 229 aa20.37■□□□□ 0.85
SQSTM1-216ENST00000626660 MYBPHLA2RUH7 354 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 ATP2C2O75185 946 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 ZMYND10O75800 440 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 MFAP3P55082 362 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 UBXN1Q04323 297 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 DLX2Q07687 328 aaPredicted RBP20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 MDH1BQ5I0G3 518 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 PHLDB3Q6NSJ2 640 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 FAM171BQ6P995 826 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 ENOSF1Q7L5Y1 443 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 ACOT1Q86TX2 421 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 SPATA2LQ8IUW3 424 aaPredicted RBP20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 ATAD1Q8NBU5 361 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 RNF214Q8ND24 703 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 MYCBPAPQ8TBZ2 947 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 LSM14BQ9BX40 385 aaKnown RBP20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 DPEP3Q9H4B8 488 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 UBE2TQ9NPD8 197 aaPredicted RBP20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 CRTAC1Q9NQ79 661 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 ZDHHC7Q9NXF8 308 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 HSFX1Q9UBD0 423 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 APEX2Q9UBZ4 518 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 CD207Q9UJ71 328 aa20.36■□□□□ 0.85
SQSTM1-216ENST00000626660 ATP8B3O60423 1300 aa20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 H3BQ06 376 aaPredicted RBP20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 SEC24AO95486 1093 aa20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 LRG1P02750 347 aa20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 HNRNPA1P09651 372 aaKnown RBP eCLIP20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 DUSP4Q13115 394 aa20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 RARS2Q5T160 578 aaKnown RBP20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 APTXQ7Z2E3 356 aaKnown RBP20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 CRYBG2Q8N1P7 616 aa20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 CMASQ8NFW8 434 aaPredicted RBP20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 JAKMIP2Q96AA8 810 aa20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 FUBP3Q96I24 572 aaKnown RBP eCLIP20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 PCMTD1Q96MG8 357 aaPredicted RBP20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 PKMYT1Q99640 499 aa20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 ABCB6Q9NP58 842 aa20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 TMLHEQ9NVH6 421 aa20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 THEGQ9P2T0 379 aa20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 HMGXB4Q9UGU5 601 aa20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 NME7Q9Y5B8 376 aa20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 PCDHB4Q9Y5E5 795 aa20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 INSL5Q9Y5Q6 135 aa20.35■□□□□ 0.85
SQSTM1-216ENST00000626660 XYLBO75191 536 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 RFPL2O75678 378 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 HOXA9P31269 272 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 TUFMP49411 452 aaKnown RBP20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 CYP27A1Q02318 531 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 ITIH3Q06033 890 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 KCNMA1Q12791 1236 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 PLD1Q13393 1074 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 ORC1Q13415 861 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 CLUL1Q15846 466 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 ZNF394Q53GI3 561 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 CES5AQ6NT32 575 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 SYCE2Q6PIF2 218 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 C12orf76Q8N812 135 aaPredicted RBP20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 KAT5Q92993 513 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 MYLPFQ96A32 169 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 MSLNLQ96KJ4 702 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 SEPT5Q99719 369 aaPredicted RBP20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 APOL5Q9BWW9 433 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 YIPF1Q9Y548 306 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 MYH10P35580 1976 aa20.34■□□□□ 0.85
SQSTM1-216ENST00000626660 CCDC195A0A1B0GUA6 201 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 TNFRSF10AO00220 468 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 VNN2O95498 520 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 RFX1P22670 979 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 ALDH1A3P47895 512 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 CDR1P51861 262 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 FANCCQ00597 558 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 SYCP1Q15431 976 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 CCDC142Q17RM4 750 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 AAK1Q2M2I8 961 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 MGAT5BQ3V5L5 792 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 CFAP221Q4G0U5 840 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 TMEM270Q6UE05 265 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 TMC5Q6UXY8 1006 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 CYP26C1Q6V0L0 522 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 ELMOD1Q8N336 334 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 WHAMMQ8TF30 809 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 PCED1BQ96HM7 432 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 TMEM176AQ96HP8 235 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 KREMEN1Q96MU8 473 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 TWNKQ96RR1 684 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 MED10Q9BTT4 135 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 PRKD2Q9BZL6 878 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 ELOVL4Q9GZR5 314 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 PIDD1Q9HB75 910 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 SIX2Q9NPC8 291 aa20.33■□□□□ 0.85
SQSTM1-216ENST00000626660 PLCB1Q9NQ66 1216 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms