RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 CHFRQ96EP1 664 aa12.34□□□□□ -0.43
CPNE3-210ENST00000621245 TSPAN18Q96SJ8 248 aa12.34□□□□□ -0.43
CPNE3-210ENST00000621245 PKMYT1Q99640 499 aa12.34□□□□□ -0.43
CPNE3-210ENST00000621245 OXCT2Q9BYC2 517 aaPredicted RBP12.34□□□□□ -0.43
CPNE3-210ENST00000621245 CHRDQ9H2X0 955 aa12.34□□□□□ -0.43
CPNE3-210ENST00000621245 ABI2Q9NYB9 513 aaPredicted RBP12.34□□□□□ -0.43
CPNE3-210ENST00000621245 SIX4Q9UIU6 781 aa12.34□□□□□ -0.43
CPNE3-210ENST00000621245 CCL26Q9Y258 94 aa12.34□□□□□ -0.43
CPNE3-210ENST00000621245 KPNA7A9QM74 516 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 KINO60870 393 aaKnown RBP12.33□□□□□ -0.44
CPNE3-210ENST00000621245 LILRB5O75023 590 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 HAPLN1P10915 354 aaPredicted RBP12.33□□□□□ -0.44
CPNE3-210ENST00000621245 HMGA1P17096 107 aaKnown RBP12.33□□□□□ -0.44
CPNE3-210ENST00000621245 GAP43P17677 238 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 PDCP20941 246 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 CASP1P29466 404 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 ID4P47928 161 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 NAIF1Q69YI7 327 aaPredicted RBP12.33□□□□□ -0.44
CPNE3-210ENST00000621245 SLFN12LQ6IEE8 588 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 ARMCX5Q6P1M9 558 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 ZC3H14Q6PJT7 736 aaKnown RBP12.33□□□□□ -0.44
CPNE3-210ENST00000621245 FAM200AQ8TCP9 573 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 ACCSQ96QU6 501 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 HINFPQ9BQA5 517 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 PI4K2AQ9BTU6 479 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 SLC46A2Q9BY10 475 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 BACH2Q9BYV9 841 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 ADAM33Q9BZ11 813 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 MTMR12Q9C0I1 747 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 LMAN1LQ9HAT1 526 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 PDE11AQ9HCR9 933 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 TRPV5Q9NQA5 729 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 OLFML3Q9NRN5 406 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 PANK4Q9NVE7 773 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 RBAKQ9NYW8 714 aaPredicted RBP12.33□□□□□ -0.44
CPNE3-210ENST00000621245 GTSE1Q9NYZ3 720 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 SEL1LQ9UBV2 794 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 CCDC39Q9UFE4 941 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 AGAP1Q9UPQ3 857 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 MYOFQ9NZM1 2061 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 SDK1Q7Z5N4 2213 aa12.33□□□□□ -0.44
CPNE3-210ENST00000621245 ASPMQ8IZT6 3477 aa12.32□□□□□ -0.44
CPNE3-210ENST00000621245 OTOL1A6NHN0 477 aaPredicted RBP12.32□□□□□ -0.44
CPNE3-210ENST00000621245 CHADO15335 359 aa12.32□□□□□ -0.44
CPNE3-210ENST00000621245 STX6O43752 255 aa12.32□□□□□ -0.44
CPNE3-210ENST00000621245 IL18RAPO95256 599 aa12.32□□□□□ -0.44
CPNE3-210ENST00000621245 MAGEA9P43362 315 aa12.32□□□□□ -0.44
CPNE3-210ENST00000621245 NASPP49321 788 aaPredicted RBP12.32□□□□□ -0.44
CPNE3-210ENST00000621245 BFSP1Q12934 665 aa12.32□□□□□ -0.44
CPNE3-210ENST00000621245 SRSF5Q13243 272 aaKnown RBP12.32□□□□□ -0.44
CPNE3-210ENST00000621245 LPAL2Q16609 132 aa12.32□□□□□ -0.44
CPNE3-210ENST00000621245 FOXD4L6Q3SYB3 417 aaPredicted RBP12.32□□□□□ -0.44
CPNE3-210ENST00000621245 SV2CQ496J9 727 aa12.32□□□□□ -0.44
CPNE3-210ENST00000621245 PKN3Q6P5Z2 889 aa12.32□□□□□ -0.44
CPNE3-210ENST00000621245 FOXD4L3Q6VB84 417 aaPredicted RBP12.32□□□□□ -0.44
CPNE3-210ENST00000621245 CBWD2Q8IUF1 395 aa12.32□□□□□ -0.44
CPNE3-210ENST00000621245 LINC00301Q8NCQ3 95 aa12.32□□□□□ -0.44
CPNE3-210ENST00000621245 OR5B17Q8NGF7 314 aa12.32□□□□□ -0.44
CPNE3-210ENST00000621245 SEMA4AQ9H3S1 761 aa12.32□□□□□ -0.44
CPNE3-210ENST00000621245 ZSCAN32Q9NX65 697 aa12.32□□□□□ -0.44
CPNE3-210ENST00000621245 TFIP11Q9UBB9 837 aaKnown RBP12.32□□□□□ -0.44
CPNE3-210ENST00000621245 SMG5Q9UPR3 1016 aaKnown RBP12.32□□□□□ -0.44
CPNE3-210ENST00000621245 NME7Q9Y5B8 376 aa12.32□□□□□ -0.44
CPNE3-210ENST00000621245 PCDHGA2Q9Y5H1 932 aa12.32□□□□□ -0.44
CPNE3-210ENST00000621245 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.32□□□□□ -0.44
CPNE3-210ENST00000621245 MORC2Q9Y6X9 1032 aaPredicted RBP12.32□□□□□ -0.44
CPNE3-210ENST00000621245 ZFHX4Q86UP3 3567 aa12.32□□□□□ -0.44
CPNE3-210ENST00000621245 MYBPHLA2RUH7 354 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 SPECC1L-ADORA2AF8WAN1 911 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 K7ELQ4 463 aaPredicted RBP12.31□□□□□ -0.44
CPNE3-210ENST00000621245 MAN2B1O00754 1011 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 EXTL3O43909 919 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 ATP2C2O75185 946 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 F11P03951 625 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 NUDT7P0C024 238 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 CYP2F1P24903 491 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 CTHP32929 405 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 TXLNAP40222 546 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 NLRP12P59046 1061 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 PON2Q15165 354 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 DDR2Q16832 855 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 TRIM68Q6AZZ1 485 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 SHC4Q6S5L8 630 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 CCDC73Q6ZRK6 1079 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 METTL23Q86XA0 190 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 YAF2Q8IY57 180 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 SYCP3Q8IZU3 236 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 RUBCNQ92622 972 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 INTS4Q96HW7 963 aaKnown RBP12.31□□□□□ -0.44
CPNE3-210ENST00000621245 NELL2Q99435 816 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 EPC1Q9H2F5 836 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 PARD6AQ9NPB6 346 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 HPS4Q9NQG7 708 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 POLR3BQ9NW08 1133 aaPredicted RBP12.31□□□□□ -0.44
CPNE3-210ENST00000621245 DSEQ9UL01 958 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 MRPS17Q9Y2R5 130 aaKnown RBP12.31□□□□□ -0.44
CPNE3-210ENST00000621245 ASB3Q9Y575 518 aa12.31□□□□□ -0.44
CPNE3-210ENST00000621245 MYH10P35580 1976 aa12.3□□□□□ -0.44
CPNE3-210ENST00000621245 MED19A0JLT2 244 aaPredicted RBP12.3□□□□□ -0.44
CPNE3-210ENST00000621245 K7ESF4 209 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms