RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 BCO2Q9BYV7 579 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 GTPBP4Q9BZE4 634 aaKnown RBP14.42□□□□□ -0.1
LINC00540-202ENST00000616974 DSEQ9UL01 958 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 COQ4Q9Y3A0 265 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 MYO16Q9Y6X6 1858 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 COL4A3Q01955 1670 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 A8MXQ7 604 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 ATP1A3P13637 1013 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 HOXB8P17481 243 aaPredicted RBP14.41□□□□□ -0.1
LINC00540-202ENST00000616974 ERCC5P28715 1186 aaPredicted RBP14.41□□□□□ -0.1
LINC00540-202ENST00000616974 ATICP31939 592 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 AP3M2P53677 418 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 MYL7Q01449 175 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 STX1AQ16623 288 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 PPM1LQ5SGD2 360 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 FOXR2Q6PJQ5 311 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 PAQR9Q6ZVX9 377 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 RRAGAQ7L523 313 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 GPIHBP1Q8IV16 184 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 MYLPFQ96A32 169 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 ACBD6Q9BR61 282 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 ELOVL4Q9GZR5 314 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 FAM49BQ9NUQ9 324 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 DZANK1Q9NVP4 752 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.41□□□□□ -0.1
LINC00540-202ENST00000616974 C2CD4DB7Z1M9 353 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 TACC1O75410 805 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 CCDC130P13994 396 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 SLC9A1P19634 815 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 STXBP5Q5T5C0 1151 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 FAM171BQ6P995 826 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 TMEM86AQ8N2M4 240 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 AOPEPQ8N6M6 819 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 MYADMQ96S97 322 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 ZNF518BQ9C0D4 1074 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 ZNF334Q9HCZ1 680 aaPredicted RBP14.41□□□□□ -0.1
LINC00540-202ENST00000616974 TAB2Q9NYJ8 693 aa14.41□□□□□ -0.1
LINC00540-202ENST00000616974 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.41□□□□□ -0.1
LINC00540-202ENST00000616974 BDNFP23560 247 aa14.4□□□□□ -0.1
LINC00540-202ENST00000616974 GTF2H1P32780 548 aa14.4□□□□□ -0.1
LINC00540-202ENST00000616974 ZSCAN23Q3MJ62 389 aa14.4□□□□□ -0.1
LINC00540-202ENST00000616974 MGAT5BQ3V5L5 792 aa14.4□□□□□ -0.1
LINC00540-202ENST00000616974 TPGS2Q68CL5 300 aa14.4□□□□□ -0.1
LINC00540-202ENST00000616974 DHX40Q8IX18 779 aaKnown RBP14.4□□□□□ -0.1
LINC00540-202ENST00000616974 THEM5Q8N1Q8 247 aa14.4□□□□□ -0.1
LINC00540-202ENST00000616974 METTL14Q9HCE5 456 aaKnown RBP14.4□□□□□ -0.1
LINC00540-202ENST00000616974 ACP6Q9NPH0 428 aa14.4□□□□□ -0.1
LINC00540-202ENST00000616974 PATJQ8NI35 1801 aa14.4□□□□□ -0.1
LINC00540-202ENST00000616974 ARHGEF37A1IGU5 675 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 KCNJ18B7U540 433 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 BEST1O76090 585 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 KLK7P49862 253 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 CYP27A1Q02318 531 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 ITIH3Q06033 890 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 KCNJ12Q14500 433 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 TPD52L1Q16890 204 aaPredicted RBP14.39□□□□□ -0.11
LINC00540-202ENST00000616974 CDKAL1Q5VV42 579 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 PHLDB3Q6NSJ2 640 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 CES5AQ6NT32 575 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 GET4Q7L5D6 327 aaPredicted RBP14.39□□□□□ -0.11
LINC00540-202ENST00000616974 DPH6Q7L8W6 267 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 B3GALNT2Q8NCR0 500 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 UHRF1Q96T88 793 aaPredicted RBP14.39□□□□□ -0.11
LINC00540-202ENST00000616974 CORO1BQ9BR76 489 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 B3GNT5Q9BYG0 378 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 NIF3L1Q9GZT8 377 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 ANO10Q9NW15 660 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 ZDHHC7Q9NXF8 308 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 MYOFQ9NZM1 2061 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 RNF225M0QZC1 329 aaPredicted RBP14.39□□□□□ -0.11
LINC00540-202ENST00000616974 MOSPD3O75425 235 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 AFPP02771 609 aaKnown RBP14.39□□□□□ -0.11
LINC00540-202ENST00000616974 ASGR2P07307 311 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 PNMA6AP0CW24 399 aaPredicted RBP14.39□□□□□ -0.11
LINC00540-202ENST00000616974 SRGAP2BP0DMP2 458 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 PTPN1P18031 435 aaKnown RBP14.39□□□□□ -0.11
LINC00540-202ENST00000616974 ELF1P32519 619 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 SSTR3P32745 418 aaPredicted RBP14.39□□□□□ -0.11
LINC00540-202ENST00000616974 MTIF2P46199 727 aaKnown RBP14.39□□□□□ -0.11
LINC00540-202ENST00000616974 LHX1P48742 406 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 TSPY1Q01534 308 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 DPY19L2P1Q6NXN4 242 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 ENOX1Q8TC92 643 aaKnown RBP14.39□□□□□ -0.11
LINC00540-202ENST00000616974 RSAD2Q8WXG1 361 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 KREMEN1Q96MU8 473 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 KCNK16Q96T55 309 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 LRRC3Q9BY71 257 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 SNX25Q9H3E2 840 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 THAP9Q9H5L6 903 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 PIDD1Q9HB75 910 aa14.39□□□□□ -0.11
LINC00540-202ENST00000616974 FAM170AA1A519 330 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 NCANO14594 1321 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 CLUHO75153 1309 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 CILPO75339 1184 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 PAPLNO95428 1278 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 RHOP08100 348 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 CCDC192P0DO97 292 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 USP46P62068 366 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 ENPEPQ07075 957 aa14.38□□□□□ -0.11
LINC00540-202ENST00000616974 KRT31Q15323 416 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms