RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 SPPL2BQ8TCT7 592 aa17.67■□□□□ 0.42
CCDC28A-202ENST00000611852 SMG7Q92540 1137 aaKnown RBP17.67■□□□□ 0.42
CCDC28A-202ENST00000611852 RIPOR3Q96MK2 946 aa17.67■□□□□ 0.42
CCDC28A-202ENST00000611852 DPEP3Q9H4B8 488 aa17.67■□□□□ 0.42
CCDC28A-202ENST00000611852 HSFX1Q9UBD0 423 aa17.67■□□□□ 0.42
CCDC28A-202ENST00000611852 FAM50BQ9Y247 325 aa17.67■□□□□ 0.42
CCDC28A-202ENST00000611852 SLC27A5Q9Y2P5 690 aa17.67■□□□□ 0.42
CCDC28A-202ENST00000611852 C2orf16Q68DN1 1984 aa17.67■□□□□ 0.42
CCDC28A-202ENST00000611852 CCL16O15467 120 aa17.66■□□□□ 0.42
CCDC28A-202ENST00000611852 POU2F2P09086 479 aa17.66■□□□□ 0.42
CCDC28A-202ENST00000611852 MTHFRP42898 656 aa17.66■□□□□ 0.42
CCDC28A-202ENST00000611852 LRMPQ12912 555 aa17.66■□□□□ 0.42
CCDC28A-202ENST00000611852 TJAP1Q5JTD0 557 aa17.66■□□□□ 0.42
CCDC28A-202ENST00000611852 MIIPQ5JXC2 388 aa17.66■□□□□ 0.42
CCDC28A-202ENST00000611852 EHBP1Q8NDI1 1231 aa17.66■□□□□ 0.42
CCDC28A-202ENST00000611852 ARID3AQ99856 593 aa17.66■□□□□ 0.42
CCDC28A-202ENST00000611852 HSD3B7Q9H2F3 369 aa17.66■□□□□ 0.42
CCDC28A-202ENST00000611852 ABI2Q9NYB9 513 aaPredicted RBP17.66■□□□□ 0.42
CCDC28A-202ENST00000611852 YIPF1Q9Y548 306 aa17.66■□□□□ 0.42
CCDC28A-202ENST00000611852 PCDHB5Q9Y5E4 795 aa17.66■□□□□ 0.42
CCDC28A-202ENST00000611852 C5orf42Q9H799 3197 aa17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 LRG1P02750 347 aa17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 PRKCSHP14314 528 aaPredicted RBP17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 PTPN1P18031 435 aaKnown RBP17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 ZNF165P49910 485 aa17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 NDST1P52848 882 aa17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 TWF1Q12792 350 aa17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 MAPRE1Q15691 268 aaKnown RBP17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 VWA3BQ502W6 1294 aa17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 UNC93AQ86WB7 457 aa17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 DHX40Q8IX18 779 aaKnown RBP17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 B3GALNT2Q8NCR0 500 aa17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 MYCBPAPQ8TBZ2 947 aa17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 NECTIN4Q96NY8 510 aa17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 NT5C1BQ96P26 610 aa17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 LPIN3Q9BQK8 851 aa17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 NDST4Q9H3R1 872 aa17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 PIDD1Q9HB75 910 aa17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 GCNT4Q9P109 453 aa17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 HMGXB4Q9UGU5 601 aa17.65■□□□□ 0.42
CCDC28A-202ENST00000611852 XYLBO75191 536 aa17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 SOAT2O75908 522 aa17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 ZNF18P17022 549 aa17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 CD58P19256 250 aa17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 TUFMP49411 452 aaKnown RBP17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 CUL2Q13617 745 aa17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 CFAP221Q4G0U5 840 aa17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 MDH1BQ5I0G3 518 aa17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 WHAMMQ8TF30 809 aa17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 MYLPFQ96A32 169 aa17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 PCED1BQ96HM7 432 aa17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 FUBP3Q96I24 572 aaKnown RBP eCLIP17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 TNIP3Q96KP6 325 aa17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 SEPT5Q99719 369 aaPredicted RBP17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 CRACR2AQ9BSW2 395 aa17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 INTS2Q9H0H0 1204 aaKnown RBP17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 POMKQ9H5K3 350 aa17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 FAM124BQ9H5Z6 455 aaPredicted RBP17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 ABCB6Q9NP58 842 aa17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 CISHQ9NSE2 258 aa17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 DOCK6Q96HP0 2047 aa17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 TCF20Q9UGU0 1960 aaKnown RBP17.64■□□□□ 0.41
CCDC28A-202ENST00000611852 GTPBP10A4D1E9 387 aaKnown RBP17.63■□□□□ 0.41
CCDC28A-202ENST00000611852 CILPO75339 1184 aa17.63■□□□□ 0.41
CCDC28A-202ENST00000611852 HAPLN1P10915 354 aaPredicted RBP17.63■□□□□ 0.41
CCDC28A-202ENST00000611852 CYP2F1P24903 491 aa17.63■□□□□ 0.41
CCDC28A-202ENST00000611852 ORC1Q13415 861 aa17.63■□□□□ 0.41
CCDC28A-202ENST00000611852 KRT31Q15323 416 aa17.63■□□□□ 0.41
CCDC28A-202ENST00000611852 MGAT5BQ3V5L5 792 aa17.63■□□□□ 0.41
CCDC28A-202ENST00000611852 C4orf50Q6ZRC1 276 aa17.63■□□□□ 0.41
CCDC28A-202ENST00000611852 ACOT1Q86TX2 421 aa17.63■□□□□ 0.41
CCDC28A-202ENST00000611852 SPATA2LQ8IUW3 424 aaPredicted RBP17.63■□□□□ 0.41
CCDC28A-202ENST00000611852 CRYBG2Q8N1P7 616 aa17.63■□□□□ 0.41
CCDC28A-202ENST00000611852 TWNKQ96RR1 684 aa17.63■□□□□ 0.41
CCDC28A-202ENST00000611852 WDR6Q9NNW5 1121 aaKnown RBP17.63■□□□□ 0.41
CCDC28A-202ENST00000611852 TAB2Q9NYJ8 693 aa17.63■□□□□ 0.41
CCDC28A-202ENST00000611852 CEP72Q9P209 647 aa17.63■□□□□ 0.41
CCDC28A-202ENST00000611852 TBXAS1P24557 533 aaPredicted RBP17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 ALDH1A3P47895 512 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 CYP27A1Q02318 531 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 PLD1Q13393 1074 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 IQCB1Q15051 598 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 EXOC3L4Q17RC7 722 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 TRIM65Q6PJ69 517 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 GBP6Q6ZN66 633 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 GRASPQ7Z6J2 395 aaPredicted RBP17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 PPM1KQ8N3J5 372 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 TTC39CQ8N584 583 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 PHF7Q9BWX1 381 aaPredicted RBP17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 NT5C1AQ9BXI3 368 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 HCFC1R1Q9NWW0 138 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 DNMT3BQ9UBC3 853 aaKnown RBP17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 VCANP13611 3396 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 SMTNL1A8MU46 457 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 ATF6P18850 670 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 SLC9A1P19634 815 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 EPHB3P54753 998 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 GCNT1Q02742 428 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 PHLDB3Q6NSJ2 640 aa17.62■□□□□ 0.41
CCDC28A-202ENST00000611852 ARHGEF19Q8IW93 802 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms