RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 AOPEPQ8N6M6 819 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 NOC3LQ8WTT2 800 aaKnown RBP9.42□□□□□ -0.9
TRIM28-214ENST00000600840 ANP32BQ92688 251 aaKnown RBP9.42□□□□□ -0.9
TRIM28-214ENST00000600840 SLC35C1Q96A29 364 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 UROC1Q96N76 676 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 PLA2G2FQ9BZM2 168 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 RBSNQ9H1K0 784 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 RPF1Q9H9Y2 349 aaKnown RBP9.42□□□□□ -0.9
TRIM28-214ENST00000600840 INTS13Q9NVM9 706 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 SPATA6Q9NWH7 488 aaPredicted RBP9.42□□□□□ -0.9
TRIM28-214ENST00000600840 CDH7Q9ULB5 785 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 DERAQ9Y315 318 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 C2CD2Q9Y426 696 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 MTF2Q9Y483 593 aaPredicted RBP9.42□□□□□ -0.9
TRIM28-214ENST00000600840 BACE2Q9Y5Z0 518 aa9.42□□□□□ -0.9
TRIM28-214ENST00000600840 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.42□□□□□ -0.9
TRIM28-214ENST00000600840 ANO9A1A5B4 782 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 PRR5-ARHGAP8B1AHC4 643 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 PIRO00625 290 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 SPTLC1O15269 473 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 ABLIM3O94929 683 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 VNN1O95497 513 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 VNN2O95498 520 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 GNA14O95837 355 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 CST3P01034 146 aaPredicted RBP9.41□□□□□ -0.9
TRIM28-214ENST00000600840 NFICP08651 508 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 ATP1A3P13637 1013 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 CYP3A5P20815 502 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 LRPAP1P30533 357 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 HOXA9P31269 272 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 CCR2P41597 374 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 MATR3P43243 847 aaKnown RBP eCLIP9.41□□□□□ -0.9
TRIM28-214ENST00000600840 VAMP7P51809 220 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 ARHGAP8P85298 464 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 CSTF1Q05048 431 aaKnown RBP9.41□□□□□ -0.9
TRIM28-214ENST00000600840 BFSP1Q12934 665 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 TCP11X2Q5H9J9 407 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 SLC8B1Q6J4K2 584 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 TSSK4Q6SA08 328 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 ANKS3Q6ZW76 656 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 INTS8Q75QN2 995 aaKnown RBP9.41□□□□□ -0.9
TRIM28-214ENST00000600840 LUZP1Q86V48 1076 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 NT5DC4Q86YG4 428 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 WDR49Q8IV35 697 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 NPAS3Q8IXF0 933 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 C1orf127Q8N9H9 656 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 ZNF461Q8TAF7 563 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 LMO3Q8TAP4 145 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 FAM200AQ8TCP9 573 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 TCEAL4Q96EI5 215 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 MCRS1Q96EZ8 462 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 SUSD3Q96L08 255 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 CGRRF1Q99675 332 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 KXD1Q9BQD3 176 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 TSPY26PQ9H489 355 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 METTL14Q9HCE5 456 aaKnown RBP9.41□□□□□ -0.9
TRIM28-214ENST00000600840 TOPORSQ9NS56 1045 aaPredicted RBP9.41□□□□□ -0.9
TRIM28-214ENST00000600840 LIMA1Q9UHB6 759 aaKnown RBP9.41□□□□□ -0.9
TRIM28-214ENST00000600840 SIX4Q9UIU6 781 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 FBXL5Q9UKA1 691 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 FRMD4BQ9Y2L6 1034 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 COQ4Q9Y3A0 265 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 TIMM13Q9Y5L4 95 aaPredicted RBP9.41□□□□□ -0.9
TRIM28-214ENST00000600840 SCN1AP35498 2009 aa9.41□□□□□ -0.9
TRIM28-214ENST00000600840 USP24Q9UPU5 2620 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 NCANO14594 1321 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 ARHGEF37A1IGU5 675 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 SHISA7A6NL88 538 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 SMTNL1A8MU46 457 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 AP5Z1O43299 807 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 LAMTOR5O43504 91 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 MOSPD3O75425 235 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 RHOP08100 348 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 OR4Q2P0C623 313 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 TRIM49P0CI25 452 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 TRIM49CP0CI26 452 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 CEBPBP17676 345 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 CDR1P51861 262 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 SPEM2Q0P670 501 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 SURF1Q15526 300 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 LPAL2Q16609 132 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 UVSSAQ2YD98 709 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 ZACNQ401N2 412 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 CTXN3Q4LDR2 81 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 CBWD6Q4V339 395 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 PABPC1LQ4VXU2 614 aaKnown RBP9.4□□□□□ -0.9
TRIM28-214ENST00000600840 CBWD3Q5JTY5 395 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 PRSS36Q5K4E3 855 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 CBWD5Q5RIA9 395 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 PDXDC1Q6P996 788 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 RNF19BQ6ZMZ0 732 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 SV2AQ7L0J3 742 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 TRAPPC11Q7Z392 1133 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 LIMS2Q7Z4I7 341 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 HS6ST3Q8IZP7 471 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 GPR161Q8N6U8 529 aaKnown RBP9.4□□□□□ -0.9
TRIM28-214ENST00000600840 NXPE3Q969Y0 559 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 CNOT6LQ96LI5 555 aaKnown RBP9.4□□□□□ -0.9
TRIM28-214ENST00000600840 NAT10Q9H0A0 1025 aaKnown RBP9.4□□□□□ -0.9
TRIM28-214ENST00000600840 EPC1Q9H2F5 836 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms