RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 PDCL2Q8N4E4 241 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 TTC9BQ8N6N2 239 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 C1orf127Q8N9H9 656 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 MRPS31Q92665 395 aaKnown RBP14.64□□□□□ -0.07
TRIM28-211ENST00000597968 CLIC6Q96NY7 704 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 LPIN3Q9BQK8 851 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 SLC46A2Q9BY10 475 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 PANK4Q9NVE7 773 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 ABI2Q9NYB9 513 aaPredicted RBP14.64□□□□□ -0.07
TRIM28-211ENST00000597968 AGAP1Q9UPQ3 857 aa14.64□□□□□ -0.07
TRIM28-211ENST00000597968 SLC38A8A6NNN8 435 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 GABRDO14764 452 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 STX6O43752 255 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 ATG13O75143 517 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 SOAT2O75908 522 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 F11P03951 625 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 RETP07949 1114 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 TMEM191BP0C7N4 346 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 HMGA1P17096 107 aaKnown RBP14.63□□□□□ -0.07
TRIM28-211ENST00000597968 PFKLP17858 780 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 POLR2BP30876 1174 aaKnown RBP14.63□□□□□ -0.07
TRIM28-211ENST00000597968 PDE6CP51160 858 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 KCNA1Q09470 495 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 MAPRE1Q15691 268 aaKnown RBP14.63□□□□□ -0.07
TRIM28-211ENST00000597968 INTS6LQ5JSJ4 861 aaKnown RBP14.63□□□□□ -0.07
TRIM28-211ENST00000597968 TSSK4Q6SA08 328 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 MON1AQ86VX9 555 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 DCLK2Q8N568 766 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 CSGALNACT2Q8N6G5 542 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 KIAA1958Q8N8K9 716 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 FSIP1Q8NA03 581 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 CXorf38Q8TB03 319 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 ANKRD36BP1Q96IX9 119 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 LRRC3BQ96PB8 259 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 USP28Q96RU2 1077 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 FAM83CQ9BQN1 747 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 MAGEF1Q9HAY2 307 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 TDP1Q9NUW8 608 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 DDX43Q9NXZ2 648 aaKnown RBP14.63□□□□□ -0.07
TRIM28-211ENST00000597968 EHD2Q9NZN4 543 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 MTMR6Q9Y217 621 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 F5P12259 2224 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 CACNA1AO00555 2505 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 ANK1P16157 1881 aa14.63□□□□□ -0.07
TRIM28-211ENST00000597968 TICRRQ7Z2Z1 1910 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 ZNF233A6NK53 670 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 EIF3DO15371 548 aaKnown RBP eCLIP14.62□□□□□ -0.07
TRIM28-211ENST00000597968 PRPF40AO75400 957 aaKnown RBP14.62□□□□□ -0.07
TRIM28-211ENST00000597968 NOL4O94818 638 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 PRAMEF12O95522 483 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 MAGEA11P43364 429 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 SATB1Q01826 763 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 BFSP1Q12934 665 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 RUNX3Q13761 415 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 GAS6Q14393 721 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 PDGFRLQ15198 375 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 C4orf50Q6ZRC1 276 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 LIMS2Q7Z4I7 341 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 LINC00301Q8NCQ3 95 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 CCDC26Q8TAB7 109 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 INTS13Q9NVM9 706 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 KBTBD4Q9NVX7 518 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 GTSE1Q9NYZ3 720 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 CGNQ9P2M7 1197 aaKnown RBP14.62□□□□□ -0.07
TRIM28-211ENST00000597968 L1RE1Q9UN81 338 aa14.62□□□□□ -0.07
TRIM28-211ENST00000597968 K7ELQ4 463 aaPredicted RBP14.61□□□□□ -0.07
TRIM28-211ENST00000597968 K7ESF4 209 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 TRDMT1O14717 391 aaKnown RBP14.61□□□□□ -0.07
TRIM28-211ENST00000597968 YEATS4O95619 227 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 TCF3P15923 654 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 TGM1P22735 817 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 CASP5P51878 434 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 CYP4F8P98187 520 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 CEBPZQ03701 1054 aaKnown RBP14.61□□□□□ -0.07
TRIM28-211ENST00000597968 FAM160A1Q05DH4 1040 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 GRSF1Q12849 480 aaKnown RBP eCLIP14.61□□□□□ -0.07
TRIM28-211ENST00000597968 DUOXA2Q1HG44 320 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 FBXO43Q4G163 708 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 CC2D1AQ6P1N0 951 aaPredicted RBP14.61□□□□□ -0.07
TRIM28-211ENST00000597968 FAM171BQ6P995 826 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 VSTM1Q6UX27 236 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 TMEM150AQ86TG1 271 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 WDR49Q8IV35 697 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 IQUBQ8NA54 791 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 GIPC2Q8TF65 315 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 SAAL1Q96ER3 474 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 ZNF396Q96N95 335 aaPredicted RBP14.61□□□□□ -0.07
TRIM28-211ENST00000597968 PKMYT1Q99640 499 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 CBWD1Q9BRT8 395 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 RTKNQ9BST9 563 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 TBC1D7Q9P0N9 293 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 SNX9Q9Y5X1 595 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 SCN1AP35498 2009 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 UBE4BO95155 1302 aa14.61□□□□□ -0.07
TRIM28-211ENST00000597968 SPTLC2O15270 562 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 TNNC2P02585 160 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 DRD1P21728 446 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 PPP3CCP48454 512 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 STK38Q15208 465 aa14.6□□□□□ -0.07
TRIM28-211ENST00000597968 RSPO4Q2I0M5 234 aaPredicted RBP14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms