RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 FBXL13Q8NEE6 735 aa11.85□□□□□ -0.51
LIG1-211ENST00000596457 GIPC2Q8TF65 315 aa11.85□□□□□ -0.51
LIG1-211ENST00000596457 TAF4BQ92750 862 aa11.85□□□□□ -0.51
LIG1-211ENST00000596457 SEMA4DQ92854 862 aa11.85□□□□□ -0.51
LIG1-211ENST00000596457 SDCBP2Q9H190 292 aa11.85□□□□□ -0.51
LIG1-211ENST00000596457 DPEP3Q9H4B8 488 aa11.85□□□□□ -0.51
LIG1-211ENST00000596457 RAB20Q9NX57 234 aa11.85□□□□□ -0.51
LIG1-211ENST00000596457 TMEM63CQ9P1W3 806 aa11.85□□□□□ -0.51
LIG1-211ENST00000596457 DNMT3BQ9UBC3 853 aaKnown RBP11.85□□□□□ -0.51
LIG1-211ENST00000596457 CDH9Q9ULB4 789 aa11.85□□□□□ -0.51
LIG1-211ENST00000596457 YIPF1Q9Y548 306 aa11.85□□□□□ -0.51
LIG1-211ENST00000596457 CLUHO75153 1309 aa11.85□□□□□ -0.51
LIG1-211ENST00000596457 DOCK6Q96HP0 2047 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 C2CD4DB7Z1M9 353 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 LOC730098B7Z3J9 87 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 TACC1O75410 805 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 ASS1P00966 412 aaKnown RBP11.84□□□□□ -0.51
LIG1-211ENST00000596457 MYL4P12829 197 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 CD58P19256 250 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 FSHRP23945 695 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 HOXA9P31269 272 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 MTIF2P46199 727 aaKnown RBP11.84□□□□□ -0.51
LIG1-211ENST00000596457 FMO5P49326 533 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 EPHB3P54753 998 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 ORC1Q13415 861 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 TAF12Q16514 161 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 PABPC1LQ4VXU2 614 aaKnown RBP11.84□□□□□ -0.51
LIG1-211ENST00000596457 MDH1BQ5I0G3 518 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 SDHAF4Q5VUM1 108 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 IQCEQ6IPM2 695 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 CYP26C1Q6V0L0 522 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 LIMS2Q7Z4I7 341 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 SCN4BQ8IWT1 228 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 TDRD5Q8NAT2 981 aaKnown RBP11.84□□□□□ -0.51
LIG1-211ENST00000596457 ST13P5Q8NFI4 369 aaPredicted RBP11.84□□□□□ -0.51
LIG1-211ENST00000596457 SPATA18Q8TC71 538 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 SPPL2BQ8TCT7 592 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 GPR152Q8TDT2 470 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 ING5Q8WYH8 240 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 TATDN2Q93075 761 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 SLC35C1Q96A29 364 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 ACSF2Q96CM8 615 aaPredicted RBP11.84□□□□□ -0.51
LIG1-211ENST00000596457 CNOT6LQ96LI5 555 aaKnown RBP11.84□□□□□ -0.51
LIG1-211ENST00000596457 MED15Q96RN5 788 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 MED10Q9BTT4 135 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 RHOBTB2Q9BYZ6 727 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 VRTNQ9H8Y1 702 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 APOBEC3GQ9HC16 384 aaKnown RBP11.84□□□□□ -0.51
LIG1-211ENST00000596457 WDR6Q9NNW5 1121 aaKnown RBP11.84□□□□□ -0.51
LIG1-211ENST00000596457 CRTAC1Q9NQ79 661 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 CEP72Q9P209 647 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 MAGEC2Q9UBF1 373 aaPredicted RBP11.84□□□□□ -0.51
LIG1-211ENST00000596457 MAFFQ9ULX9 164 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 NME7Q9Y5B8 376 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.84□□□□□ -0.51
LIG1-211ENST00000596457 CACNA1GO43497 2377 aa11.84□□□□□ -0.51
LIG1-211ENST00000596457 RHOP08100 348 aa11.83□□□□□ -0.52
LIG1-211ENST00000596457 HAPLN1P10915 354 aaPredicted RBP11.83□□□□□ -0.52
LIG1-211ENST00000596457 PTPN1P18031 435 aaKnown RBP11.83□□□□□ -0.52
LIG1-211ENST00000596457 CYP2F1P24903 491 aa11.83□□□□□ -0.52
LIG1-211ENST00000596457 TUFMP49411 452 aaKnown RBP11.83□□□□□ -0.52
LIG1-211ENST00000596457 GPR15P49685 360 aa11.83□□□□□ -0.52
LIG1-211ENST00000596457 KCNH2Q12809 1159 aa11.83□□□□□ -0.52
LIG1-211ENST00000596457 SMARCB1Q12824 385 aa11.83□□□□□ -0.52
LIG1-211ENST00000596457 PLD1Q13393 1074 aa11.83□□□□□ -0.52
LIG1-211ENST00000596457 NFE2Q16621 373 aaPredicted RBP11.83□□□□□ -0.52
LIG1-211ENST00000596457 FOXR2Q6PJQ5 311 aa11.83□□□□□ -0.52
LIG1-211ENST00000596457 RTL10Q7L3V2 364 aa11.83□□□□□ -0.52
LIG1-211ENST00000596457 ACOT1Q86TX2 421 aa11.83□□□□□ -0.52
LIG1-211ENST00000596457 RNF135Q8IUD6 432 aa11.83□□□□□ -0.52
LIG1-211ENST00000596457 STKLD1Q8NE28 680 aa11.83□□□□□ -0.52
LIG1-211ENST00000596457 C2orf15Q8WU43 125 aaKnown RBP11.83□□□□□ -0.52
LIG1-211ENST00000596457 MYLPFQ96A32 169 aa11.83□□□□□ -0.52
LIG1-211ENST00000596457 LIMD1Q9UGP4 676 aa11.83□□□□□ -0.52
LIG1-211ENST00000596457 MAGED2Q9UNF1 606 aaPredicted RBP11.83□□□□□ -0.52
LIG1-211ENST00000596457 MYH10P35580 1976 aa11.82□□□□□ -0.52
LIG1-211ENST00000596457 PES1O00541 588 aaKnown RBP11.82□□□□□ -0.52
LIG1-211ENST00000596457 N4BP1O75113 896 aaKnown RBP11.82□□□□□ -0.52
LIG1-211ENST00000596457 AFPP02771 609 aaKnown RBP11.82□□□□□ -0.52
LIG1-211ENST00000596457 FAM163BP0C2L3 166 aa11.82□□□□□ -0.52
LIG1-211ENST00000596457 GJA1P17302 382 aa11.82□□□□□ -0.52
LIG1-211ENST00000596457 BDNFP23560 247 aa11.82□□□□□ -0.52
LIG1-211ENST00000596457 ERCC5P28715 1186 aaPredicted RBP11.82□□□□□ -0.52
LIG1-211ENST00000596457 GRIK1P39086 918 aa11.82□□□□□ -0.52
LIG1-211ENST00000596457 ASPAP45381 313 aa11.82□□□□□ -0.52
LIG1-211ENST00000596457 NDST1P52848 882 aa11.82□□□□□ -0.52
LIG1-211ENST00000596457 CETN1Q12798 172 aa11.82□□□□□ -0.52
LIG1-211ENST00000596457 VEPH1Q14D04 833 aa11.82□□□□□ -0.52
LIG1-211ENST00000596457 STX1AQ16623 288 aa11.82□□□□□ -0.52
LIG1-211ENST00000596457 DDR2Q16832 855 aa11.82□□□□□ -0.52
LIG1-211ENST00000596457 ZNF394Q53GI3 561 aa11.82□□□□□ -0.52
LIG1-211ENST00000596457 CYP4A22Q5TCH4 519 aa11.82□□□□□ -0.52
LIG1-211ENST00000596457 C4orf50Q6ZRC1 276 aa11.82□□□□□ -0.52
LIG1-211ENST00000596457 RBM43Q6ZSC3 357 aaKnown RBP11.82□□□□□ -0.52
LIG1-211ENST00000596457 C11orf57Q6ZUT1 292 aaPredicted RBP11.82□□□□□ -0.52
LIG1-211ENST00000596457 PDZD4Q76G19 769 aaPredicted RBP11.82□□□□□ -0.52
LIG1-211ENST00000596457 OTOP3Q7RTS5 596 aa11.82□□□□□ -0.52
LIG1-211ENST00000596457 TRIM59Q8IWR1 403 aa11.82□□□□□ -0.52
LIG1-211ENST00000596457 ITFG1Q8TB96 612 aa11.82□□□□□ -0.52
LIG1-211ENST00000596457 TCEAL4Q96EI5 215 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms