RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 FUT10Q6P4F1 479 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 KCNT2Q6UVM3 1135 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 ANKS3Q6ZW76 656 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 ACOT1Q86TX2 421 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 HERC6Q8IVU3 1022 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 CTNNBL1Q8WYA6 563 aaPredicted RBP16.21■□□□□ 0.19
SS18-215ENST00000580642 CLP1Q92989 425 aaKnown RBP16.21■□□□□ 0.19
SS18-215ENST00000580642 CYFIP2Q96F07 1278 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 IGSF21Q96ID5 467 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 PCDHB18PQ96TA0 734 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 CACNG4Q9UBN1 327 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 HESX1Q9UBX0 185 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 HMGXB4Q9UGU5 601 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 ZMYND8Q9ULU4 1186 aaPredicted RBP16.21■□□□□ 0.19
SS18-215ENST00000580642 RWDD3Q9Y3V2 267 aa16.21■□□□□ 0.19
SS18-215ENST00000580642 ITGB1P05556 798 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 LMO2P25791 158 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 GPC5P78333 572 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 PAN2Q504Q3 1202 aaKnown RBP16.2■□□□□ 0.18
SS18-215ENST00000580642 FAM171BQ6P995 826 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 OSTM1Q86WC4 334 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 RHOT2Q8IXI1 618 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 RNF168Q8IYW5 571 aaPredicted RBP16.2■□□□□ 0.18
SS18-215ENST00000580642 TNS4Q8IZW8 715 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 SLC39A11Q8N1S5 342 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 FIBCD1Q8N539 461 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 ANKRD52Q8NB46 1076 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 MYCBPAPQ8TBZ2 947 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 SYT15Q9BQS2 421 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 ZSWIM1Q9BR11 485 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 ZBED2Q9BTP6 218 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 UBXN6Q9BZV1 441 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 AVENQ9NQS1 362 aaPredicted RBP16.2■□□□□ 0.18
SS18-215ENST00000580642 SPG21Q9NZD8 308 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 LCMT1Q9UIC8 334 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 STRIP2Q9ULQ0 834 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 NME7Q9Y5B8 376 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 PCDHB12Q9Y5F1 795 aa16.2■□□□□ 0.18
SS18-215ENST00000580642 FNDC1Q4ZHG4 1894 aaPredicted RBP16.2■□□□□ 0.18
SS18-215ENST00000580642 KIF5CO60282 957 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 MICAL2O94851 1124 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 CALB1P05937 261 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 PDGFRBP09619 1106 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 ATP2A2P16615 1042 aaKnown RBP16.19■□□□□ 0.18
SS18-215ENST00000580642 SYN1P17600 705 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 MMP8P22894 467 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 ARHGAP25P42331 645 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 BCAT1P54687 386 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 GALCP54803 685 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 HADHBP55084 474 aaKnown RBP16.19■□□□□ 0.18
SS18-215ENST00000580642 GSCP56915 257 aaPredicted RBP16.19■□□□□ 0.18
SS18-215ENST00000580642 NFE2Q16621 373 aaPredicted RBP16.19■□□□□ 0.18
SS18-215ENST00000580642 USP41Q3LFD5 358 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 PKDCCQ504Y2 493 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 INTS6LQ5JSJ4 861 aaKnown RBP16.19■□□□□ 0.18
SS18-215ENST00000580642 SPOUT1Q5T280 376 aaKnown RBP16.19■□□□□ 0.18
SS18-215ENST00000580642 FAM171A1Q5VUB5 890 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 ZNF280DQ6N043 979 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 DCP1BQ8IZD4 617 aaKnown RBP16.19■□□□□ 0.18
SS18-215ENST00000580642 RABGGTAQ92696 567 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 TMEM169Q96HH4 297 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 TTPALQ9BTX7 342 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 TRMT1Q9NXH9 659 aaKnown RBP16.19■□□□□ 0.18
SS18-215ENST00000580642 WDR35Q9P2L0 1181 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 GTF3C4Q9UKN8 822 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 TSPAN16Q9UKR8 245 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 BACE2Q9Y5Z0 518 aa16.19■□□□□ 0.18
SS18-215ENST00000580642 MRPL42Q9Y6G3 142 aaKnown RBP16.19■□□□□ 0.18
SS18-215ENST00000580642 IGFBP6P24592 240 aaPredicted RBP16.18■□□□□ 0.18
SS18-215ENST00000580642 GPD2P43304 727 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 VARS2Q5ST30 1063 aaKnown RBP16.18■□□□□ 0.18
SS18-215ENST00000580642 PPP1R26Q5T8A7 1209 aaPredicted RBP16.18■□□□□ 0.18
SS18-215ENST00000580642 LIN9Q5TKA1 542 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 NAA35Q5VZE5 725 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 C4orf50Q6ZRC1 276 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 NYAP1Q6ZVC0 841 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 DDX53Q86TM3 631 aaKnown RBP16.18■□□□□ 0.18
SS18-215ENST00000580642 PALB2Q86YC2 1186 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 GPIHBP1Q8IV16 184 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 MCOLN2Q8IZK6 566 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 C12orf29Q8N999 325 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 COLGALT1Q8NBJ5 622 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 HASPINQ8TF76 798 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 C2orf15Q8WU43 125 aaKnown RBP16.18■□□□□ 0.18
SS18-215ENST00000580642 RFFLQ8WZ73 363 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 FUBP3Q96I24 572 aaKnown RBP eCLIP16.18■□□□□ 0.18
SS18-215ENST00000580642 HSFY1Q96LI6 401 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 PKMYT1Q99640 499 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 RTP3Q9BQQ7 232 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 PLVAPQ9BX97 442 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 GPR62Q9BZJ7 368 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 MRPL47Q9HD33 250 aaKnown RBP16.18■□□□□ 0.18
SS18-215ENST00000580642 CHST7Q9NS84 486 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 CXXC1Q9P0U4 656 aaPredicted RBP16.18■□□□□ 0.18
SS18-215ENST00000580642 UVRAGQ9P2Y5 699 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 SSX2IPQ9Y2D8 614 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 NCANO14594 1321 aa16.18■□□□□ 0.18
SS18-215ENST00000580642 I3L4J1 428 aa16.17■□□□□ 0.18
SS18-215ENST00000580642 M0QYV0 167 aa16.17■□□□□ 0.18
SS18-215ENST00000580642 TLL1O43897 1013 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms