RNA–Protein interactions for RNA: ENST00000578995.5

SMARCE1-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 2

Gene SMARCE1, Length 534 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-215ENST00000578995 PHOSPHO2Q8TCD6 241 aa4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 CLP1Q92989 425 aaKnown RBP4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 LPPQ93052 612 aa4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 SNX27Q96L92 541 aa4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 IFT74Q96LB3 600 aa4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 CCDC43Q96MW1 224 aaKnown RBP4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 ZMAT2Q96NC0 199 aaKnown RBP4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 GBP4Q96PP9 640 aa4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 GSDMAQ96QA5 445 aa4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 SLC9A7Q96T83 725 aa4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 POP1Q99575 1024 aaKnown RBP4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 DUSP9Q99956 384 aaKnown RBP4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 LBHD1Q9BQE6 289 aaPredicted RBP4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 CBWD1Q9BRT8 395 aa4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 VN1R3Q9BXE9 311 aa4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 MRPL4Q9BYD3 311 aaKnown RBP4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 TTYH1Q9H313 450 aaPredicted RBP4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 SLC39A2Q9NP94 309 aa4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 AGPAT3Q9NRZ7 376 aa4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 C1orf112Q9NSG2 853 aa4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 TBC1D7Q9P0N9 293 aa4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 CPSF3Q9UKF6 684 aaKnown RBP4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 TRAF3IP3Q9Y228 551 aa4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 PIN4Q9Y237 131 aaKnown RBP4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 PCDHB2Q9Y5E7 798 aa4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 COL4A2P08572 1712 aa4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 KIAA1549LQ6ZVL6 1849 aa4.14□□□□□ -1.75
SMARCE1-215ENST00000578995 C5orf42Q9H799 3197 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 LINC01553A4QN01 128 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 TRIM49BA6NDI0 452 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 C5orf67F2Z3F1 127 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 F8W810 466 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 N4BP3O15049 544 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 SUV39H1O43463 412 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 LPXNO60711 386 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 KINO60870 393 aaKnown RBP4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 RECQL4O94761 1208 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 DDHD2O94830 711 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 ERLIN2O94905 339 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 KIF4AO95239 1232 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 GCNT3O95395 438 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 NPTXRO95502 500 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 EOMESO95936 686 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 NFICP08651 508 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 ACTN1P12814 892 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 IDEP14735 1019 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 ATP2A2P16615 1042 aaKnown RBP4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 GARTP22102 1010 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 IGFBP4P22692 258 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 CASP4P49662 377 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 FXR1P51114 621 aaKnown RBP eCLIP4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 RAB27AP51159 221 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 AMPD3Q01432 767 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 TAP1Q03518 808 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 PSMD2Q13200 908 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 ALCAMQ13740 583 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 CAMK1Q14012 370 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 NOLC1Q14978 699 aaKnown RBP eCLIP4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 ENOX2Q16206 610 aaKnown RBP4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 KNOP1Q1ED39 458 aaKnown RBP4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 KLHL40Q2TBA0 621 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 SLC10A6Q3KNW5 377 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 DPCR1Q3MIW9 517 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 DCAF4L1Q3SXM0 396 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 ZNF568Q3ZCX4 644 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 SEZ6Q53EL9 994 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 HABP4Q5JVS0 413 aaKnown RBP4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 TTI2Q6NXR4 508 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 NOTUMQ6P988 496 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 C15orf39Q6ZRI6 1047 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 TMEM173Q86WV6 379 aaPredicted RBP4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 ZNF280BQ86YH2 543 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 TREML1Q86YW5 311 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 IRF2BP1Q8IU81 584 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 EFCAB13Q8IY85 973 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 CMTR2Q8IYT2 770 aaKnown RBP4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 CEP57L1Q8IYX8 460 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 PLD6Q8N2A8 252 aaKnown RBP4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 TRIML1Q8N9V2 468 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 SLC17A8Q8NDX2 589 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 C3orf58Q8NDZ4 430 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 RNPC3Q96LT9 517 aaKnown RBP4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 PPP1R10Q96QC0 940 aaKnown RBP4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 PAAF1Q9BRP4 392 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 LRRC27Q9C0I9 530 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 HSD3B7Q9H2F3 369 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 MRPL44Q9H9J2 332 aaKnown RBP4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 CD320Q9NPF0 282 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 TBC1D13Q9NVG8 400 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 MARCH5Q9NX47 278 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 CNTN3Q9P232 1028 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 CACNG4Q9UBN1 327 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 PCDHA11Q9Y5I1 949 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 MRPL42Q9Y6G3 142 aaKnown RBP4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 SLC4A7Q9Y6M7 1214 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 COL4A3Q01955 1670 aa4.13□□□□□ -1.75
SMARCE1-215ENST00000578995 LOC100289279A0A1B0GTE1 492 aa4.12□□□□□ -1.75
SMARCE1-215ENST00000578995 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.12□□□□□ -1.75
SMARCE1-215ENST00000578995 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.12□□□□□ -1.75
SMARCE1-215ENST00000578995 TCAF2A6NFQ2 919 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms