RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 GAB3Q8WWW8 586 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 CLEC4DQ8WXI8 215 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 HTRA1Q92743 480 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 JMJD8Q96S16 334 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 UBL7Q96S82 380 aaPredicted RBP6.53□□□□□ -1.36
VPS53-219ENST00000576019 SDF4Q9BRK5 362 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 CNNM1Q9NRU3 951 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 UCKL1Q9NWZ5 548 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 FEZ2Q9UHY8 353 aaPredicted RBP6.53□□□□□ -1.36
VPS53-219ENST00000576019 PCDHB6Q9Y5E3 794 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 PCDHA1Q9Y5I3 950 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 LRRC37A2A6NM11 1700 aa6.53□□□□□ -1.36
VPS53-219ENST00000576019 A0A0B4J269 797 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 TMEM127O75204 238 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 NTRK1P04629 796 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 ELNP15502 786 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 AOAHP28039 575 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 HERVK_113P62684 666 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 FOXO4P98177 505 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 NOLC1Q14978 699 aaKnown RBP eCLIP6.52□□□□□ -1.37
VPS53-219ENST00000576019 ANKRD45Q5TZF3 282 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 CNKSR3Q6P9H4 555 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 PAOXQ6QHF9 649 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 TMCO3Q6UWJ1 677 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 NEK10Q6ZWH5 1172 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 ENOSF1Q7L5Y1 443 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 FTSJ3Q8IY81 847 aaKnown RBP6.52□□□□□ -1.37
VPS53-219ENST00000576019 FAM71BQ8TC56 605 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 STT3BQ8TCJ2 826 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 RSAD2Q8WXG1 361 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 UBE2FQ969M7 185 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 UTP4Q969X6 686 aaKnown RBP6.52□□□□□ -1.37
VPS53-219ENST00000576019 MRGPRX1Q96LB2 322 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 DMRTA2Q96SC8 542 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 FOXB1Q99853 325 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 SENP6Q9GZR1 1112 aaPredicted RBP6.52□□□□□ -1.37
VPS53-219ENST00000576019 DHX36Q9H2U1 1008 aaKnown RBP6.52□□□□□ -1.37
VPS53-219ENST00000576019 KCNF1Q9H3M0 494 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 TDP1Q9NUW8 608 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 IGSF9Q9P2J2 1179 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 ASH2LQ9UBL3 628 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 DENND2AQ9ULE3 1009 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 GPR34Q9UPC5 381 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 MAGED1Q9Y5V3 778 aaPredicted RBP6.52□□□□□ -1.37
VPS53-219ENST00000576019 U3KQE9 123 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 GVINP1Q7Z2Y8 2422 aa6.52□□□□□ -1.37
VPS53-219ENST00000576019 ZFYVE26Q68DK2 2539 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 RIC1Q4ADV7 1423 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 A0A1W2PPH5 198 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 FAM171A2A8MVW0 826 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 HGSO14964 777 aaPredicted RBP6.51□□□□□ -1.37
VPS53-219ENST00000576019 OPHN1O60890 802 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 NDST3O95803 873 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 GLULP15104 373 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 HOXB4P17483 251 aaPredicted RBP6.51□□□□□ -1.37
VPS53-219ENST00000576019 XPAP23025 273 aaPredicted RBP6.51□□□□□ -1.37
VPS53-219ENST00000576019 GALNSP34059 522 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 TFF2Q03403 129 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 CACNB2Q08289 660 aaPredicted RBP6.51□□□□□ -1.37
VPS53-219ENST00000576019 TARDBPQ13148 414 aaKnown RBP eCLIP6.51□□□□□ -1.37
VPS53-219ENST00000576019 TRIM28Q13263 835 aaKnown RBP6.51□□□□□ -1.37
VPS53-219ENST00000576019 PTK2BQ14289 1009 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 KRT32Q14532 448 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 KHDC1LQ5JSQ8 128 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 RRAGBQ5VZM2 374 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 FAM205BPQ63HN1 556 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 ZNF385CQ66K41 422 aaPredicted RBP6.51□□□□□ -1.37
VPS53-219ENST00000576019 Q6ZS46 218 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 BEND5Q7L4P6 421 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 CREG2Q8IUH2 290 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 CDYL2Q8N8U2 506 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 HERVK_113Q902F9 699 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 LRRC46Q96FV0 321 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 FAM167AQ96KS9 214 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 SNX22Q96L94 193 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 HSPA12BQ96MM6 686 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 PLVAPQ9BX97 442 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 ADAM7Q9H2U9 754 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 SARS2Q9NP81 518 aaKnown RBP6.51□□□□□ -1.37
VPS53-219ENST00000576019 RBM12Q9NTZ6 932 aaKnown RBP6.51□□□□□ -1.37
VPS53-219ENST00000576019 NKIRAS2Q9NYR9 191 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 BTBD7Q9P203 1132 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 FEM1BQ9UK73 627 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 SCAF8Q9UPN6 1271 aaKnown RBP6.51□□□□□ -1.37
VPS53-219ENST00000576019 PCDHB4Q9Y5E5 795 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 CACNA1HO95180 2353 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 DNAH12Q6ZR08 3092 aa6.51□□□□□ -1.37
VPS53-219ENST00000576019 TSPY2A6NKD2 308 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 TOR1BO14657 336 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 HNRNPDLO14979 420 aaKnown RBP6.5□□□□□ -1.37
VPS53-219ENST00000576019 PIP5K1BO14986 540 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 SGTAO43765 313 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 PLOD3O60568 738 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 TADA3O75528 432 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 TSPY3P0CV98 308 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 TSPY8P0CW00 308 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 JUPP14923 745 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 ATXN1P54253 815 aaKnown RBP6.5□□□□□ -1.37
VPS53-219ENST00000576019 CDC42EP1Q00587 391 aa6.5□□□□□ -1.37
VPS53-219ENST00000576019 TSPY1Q01534 308 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms