RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 EDEM3Q9BZQ6 932 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 CRTAC1Q9NQ79 661 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 MTMR10Q9NXD2 777 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 PLXNA3P51805 1871 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 F8VZ95 297 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 ABLIM3O94929 683 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 KRT5P13647 590 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 NRIP1P48552 1158 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 CLCN4P51793 760 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 ZNF132P52740 706 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 ZNF394Q53GI3 561 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 TCEAL5Q5H9L2 206 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 SPECC1LQ69YQ0 1117 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 C4orf50Q6ZRC1 276 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 ACOT1Q86TX2 421 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 SLC4A11Q8NBS3 891 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 MYLIPQ8WY64 445 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 NLRC4Q9NPP4 1024 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 AFF4Q9UHB7 1163 aaKnown RBP18.19■□□□□ 0.5
NUP88-210ENST00000574867 DPP7Q9UHL4 492 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 MYO6Q9UM54 1294 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.19■□□□□ 0.59e-7■□□□□ 10.1
NUP88-210ENST00000574867 MYO7AQ13402 2215 aa18.19■□□□□ 0.5
NUP88-210ENST00000574867 ATF2P15336 505 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 ZNF75DP51815 510 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 JAM2P57087 298 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 TRIM14Q14142 442 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 ELMSAN1Q6PJG2 1045 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 RBM23Q86U06 439 aaKnown RBP18.18■□□□□ 0.5
NUP88-210ENST00000574867 FMNL3Q8IVF7 1028 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 SPPL2BQ8TCT7 592 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 FUBP3Q96I24 572 aaKnown RBP eCLIP18.18■□□□□ 0.5
NUP88-210ENST00000574867 TTYH3Q9C0H2 523 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 GPR88Q9GZN0 384 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 ABCB6Q9NP58 842 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 GTF3C4Q9UKN8 822 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 KIAA1257Q9ULG3 409 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 A0A1W2PQJ5 194 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 MYBPHLA2RUH7 354 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 MTMR11A4FU01 709 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 TGM5O43548 720 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 ATP2C2O75185 946 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 FOSL2P15408 326 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 ORC1Q13415 861 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 MDH1BQ5I0G3 518 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 PRRC2BQ5JSZ5 2229 aaKnown RBP18.18■□□□□ 0.5
NUP88-210ENST00000574867 LRRTM3Q86VH5 581 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 PALB2Q86YC2 1186 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 FAM71AQ8IYT1 594 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 HSFX1Q9UBD0 423 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 FBXW11Q9UKB1 542 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 PCDHB5Q9Y5E4 795 aa18.18■□□□□ 0.5
NUP88-210ENST00000574867 ATP8B3O60423 1300 aa18.17■□□□□ 0.5
NUP88-210ENST00000574867 PER2O15055 1255 aa18.17■□□□□ 0.5
NUP88-210ENST00000574867 NCK2O43639 380 aa18.17■□□□□ 0.5
NUP88-210ENST00000574867 USP8P40818 1118 aa18.17■□□□□ 0.5
NUP88-210ENST00000574867 CFAP221Q4G0U5 840 aa18.17■□□□□ 0.5
NUP88-210ENST00000574867 LILRA6Q6PI73 481 aa18.17■□□□□ 0.5
NUP88-210ENST00000574867 RNF19BQ6ZMZ0 732 aa18.17■□□□□ 0.5
NUP88-210ENST00000574867 SPATA2LQ8IUW3 424 aaPredicted RBP18.17■□□□□ 0.5
NUP88-210ENST00000574867 SLC22A17Q8WUG5 538 aa18.17■□□□□ 0.5
NUP88-210ENST00000574867 HDAC7Q8WUI4 952 aa18.17■□□□□ 0.5
NUP88-210ENST00000574867 MYLPFQ96A32 169 aa18.17■□□□□ 0.5
NUP88-210ENST00000574867 PCED1BQ96HM7 432 aa18.17■□□□□ 0.5
NUP88-210ENST00000574867 HEXIM2Q96MH2 286 aaKnown RBP18.17■□□□□ 0.5
NUP88-210ENST00000574867 GRPEL1Q9HAV7 217 aa18.17■□□□□ 0.5
NUP88-210ENST00000574867 HCFC2Q9Y5Z7 792 aa18.17■□□□□ 0.5
NUP88-210ENST00000574867 PTPRDP23468 1912 aa18.17■□□□□ 0.5
NUP88-210ENST00000574867 FOXN3O00409 490 aaPredicted RBP18.16■□□□□ 0.5
NUP88-210ENST00000574867 SRGAP2BP0DMP2 458 aa18.16■□□□□ 0.5
NUP88-210ENST00000574867 STAT1P42224 750 aa18.16■□□□□ 0.5
NUP88-210ENST00000574867 HYAL1Q12794 435 aa18.16■□□□□ 0.5
NUP88-210ENST00000574867 EFHBQ8N7U6 833 aa18.16■□□□□ 0.5
NUP88-210ENST00000574867 PGLYRP2Q96PD5 576 aa18.16■□□□□ 0.5
NUP88-210ENST00000574867 PLEKHA4Q9H4M7 779 aa18.16■□□□□ 0.5
NUP88-210ENST00000574867 TMLHEQ9NVH6 421 aa18.16■□□□□ 0.5
NUP88-210ENST00000574867 MTCL1Q9Y4B5 1905 aaKnown RBP18.16■□□□□ 0.5
NUP88-210ENST00000574867 VDRP11473 427 aa18.16■□□□□ 0.5
NUP88-210ENST00000574867 ELF1P32519 619 aa18.16■□□□□ 0.5
NUP88-210ENST00000574867 SOX5P35711 763 aa18.16■□□□□ 0.5
NUP88-210ENST00000574867 BPIFB4P59827 614 aa18.16■□□□□ 0.5
NUP88-210ENST00000574867 CYP27A1Q02318 531 aa18.16■□□□□ 0.5
NUP88-210ENST00000574867 ADCY1Q08828 1119 aa18.16■□□□□ 0.5
NUP88-210ENST00000574867 SGO2Q562F6 1265 aa18.16■□□□□ 0.5
NUP88-210ENST00000574867 RTL10Q7L3V2 364 aa18.16■□□□□ 0.5
NUP88-210ENST00000574867 TCEAL8Q8IYN2 117 aa18.16■□□□□ 0.5
NUP88-210ENST00000574867 ABI2Q9NYB9 513 aaPredicted RBP18.16■□□□□ 0.5
NUP88-210ENST00000574867 RNF225M0QZC1 329 aaPredicted RBP18.15■□□□□ 0.5
NUP88-210ENST00000574867 CD19P15391 556 aa18.15■□□□□ 0.5
NUP88-210ENST00000574867 PTK2Q05397 1052 aa18.15■□□□□ 0.5
NUP88-210ENST00000574867 KCNC3Q14003 757 aa18.15■□□□□ 0.5
NUP88-210ENST00000574867 STILQ15468 1287 aa18.15■□□□□ 0.5
NUP88-210ENST00000574867 CCDC142Q17RM4 750 aa18.15■□□□□ 0.5
NUP88-210ENST00000574867 LIN9Q5TKA1 542 aa18.15■□□□□ 0.5
NUP88-210ENST00000574867 ARHGAP17Q68EM7 881 aa18.15■□□□□ 0.5
NUP88-210ENST00000574867 CCDC149Q6ZUS6 474 aa18.15■□□□□ 0.5
NUP88-210ENST00000574867 KREMEN2Q8NCW0 462 aa18.15■□□□□ 0.5
NUP88-210ENST00000574867 ZNF397Q8NF99 534 aaPredicted RBP18.15■□□□□ 0.5
NUP88-210ENST00000574867 BAP1Q92560 729 aa18.15■□□□□ 0.5
NUP88-210ENST00000574867 CASP10Q92851 521 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms