RNA–Protein interactions for RNA: ENST00000573903.1

CCDC40-210, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 561 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-210ENST00000573903 TMEM191BP0C7N4 346 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 STAT6P42226 847 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 NLRP12P59046 1061 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 RPL10AP62906 217 aaKnown RBP13.11□□□□□ -0.31
CCDC40-210ENST00000573903 GRSF1Q12849 480 aaKnown RBP eCLIP13.11□□□□□ -0.31
CCDC40-210ENST00000573903 RESTQ13127 1097 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 CCINQ13939 588 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 CRELD2Q6UXH1 353 aaPredicted RBP13.11□□□□□ -0.31
CCDC40-210ENST00000573903 CCDC73Q6ZRK6 1079 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 LRRTM3Q86VH5 581 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 TMEM86AQ8N2M4 240 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 LRRC52Q8N7C0 313 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 NETO1Q8TDF5 533 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 LEO1Q8WVC0 666 aaPredicted RBP13.11□□□□□ -0.31
CCDC40-210ENST00000573903 SAAL1Q96ER3 474 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 LRRC3BQ96PB8 259 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 PI4K2AQ9BTU6 479 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 SLC46A2Q9BY10 475 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 SMG9Q9H0W8 520 aaKnown RBP13.11□□□□□ -0.31
CCDC40-210ENST00000573903 PARD6AQ9NPB6 346 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 OLFML3Q9NRN5 406 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 GKN1Q9NS71 199 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 DDX43Q9NXZ2 648 aaKnown RBP13.11□□□□□ -0.31
CCDC40-210ENST00000573903 ITGA11Q9UKX5 1188 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 AGAP1Q9UPQ3 857 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 MTMR6Q9Y217 621 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 SRPRBQ9Y5M8 271 aaKnown RBP13.11□□□□□ -0.31
CCDC40-210ENST00000573903 CLIC4Q9Y696 253 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 RALGAPA1Q6GYQ0 2036 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 CACNA1AO00555 2505 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 MYMKA6NI61 221 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 SOBPA7XYQ1 873 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 K7ESF4 209 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 ATG13O75143 517 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 GARTP22102 1010 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 ADSSP30520 456 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 CEBPZQ03701 1054 aaKnown RBP13.1□□□□□ -0.31
CCDC40-210ENST00000573903 DMWDQ09019 674 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 RUNX3Q13761 415 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 BECN1Q14457 450 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 STXBP4Q6ZWJ1 553 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 USP49Q70CQ1 688 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 PDCL2Q8N4E4 241 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 CSGALNACT2Q8N6G5 542 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 SPATA18Q8TC71 538 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 ANKRD36BP1Q96IX9 119 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 ACBD6Q9BR61 282 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 IKZF4Q9H2S9 585 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 TMEM206Q9H813 350 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 ABCB6Q9NP58 842 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 SEMA4GQ9NTN9 838 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 TDP1Q9NUW8 608 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 FBXO2Q9UK22 296 aaPredicted RBP13.1□□□□□ -0.31
CCDC40-210ENST00000573903 SLC8A2Q9UPR5 921 aa13.1□□□□□ -0.31
CCDC40-210ENST00000573903 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.1□□□□□ -0.31
CCDC40-210ENST00000573903 GPR179Q6PRD1 2367 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.09□□□□□ -0.31
CCDC40-210ENST00000573903 HRO43593 1189 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 EXTL3O43909 919 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 F11P03951 625 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 HMGA1P17096 107 aaKnown RBP13.09□□□□□ -0.31
CCDC40-210ENST00000573903 TGM1P22735 817 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 PCSK1P29120 753 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 HOXA6P31267 233 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 LHX1P48742 406 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 RBP5P82980 135 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 KCNA1Q09470 495 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 MYO1EQ12965 1108 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 SRSF5Q13243 272 aaKnown RBP13.09□□□□□ -0.31
CCDC40-210ENST00000573903 PDGFRLQ15198 375 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 CSRP2Q16527 193 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 INTS6LQ5JSJ4 861 aaKnown RBP13.09□□□□□ -0.31
CCDC40-210ENST00000573903 TXNDC8Q6A555 127 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 PRR23CQ6ZRP0 262 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 WDR5BQ86VZ2 330 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 SPATA2LQ8IUW3 424 aaPredicted RBP13.09□□□□□ -0.31
CCDC40-210ENST00000573903 CCDC65Q8IXS2 484 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 ADGRF2Q8IZF7 708 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 CPA6Q8N4T0 437 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 C1orf127Q8N9H9 656 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 FSIP1Q8NA03 581 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 USP13Q92995 863 aaPredicted RBP13.09□□□□□ -0.31
CCDC40-210ENST00000573903 DNAJC19Q96DA6 116 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 CLIC6Q96NY7 704 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 STRA6Q9BX79 667 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 EBF3Q9H4W6 596 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 TRPC7Q9HCX4 862 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 PANK4Q9NVE7 773 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 L1RE1Q9UN81 338 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 SNX9Q9Y5X1 595 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 FRYLO94915 3013 aa13.09□□□□□ -0.31
CCDC40-210ENST00000573903 CEP250Q9BV73 2442 aa13.08□□□□□ -0.32
CCDC40-210ENST00000573903 DCDC2BA2VCK2 349 aa13.08□□□□□ -0.32
CCDC40-210ENST00000573903 GOLGA8IPA6NC78 632 aa13.08□□□□□ -0.32
CCDC40-210ENST00000573903 GOLGA8JA6NMD2 632 aa13.08□□□□□ -0.32
CCDC40-210ENST00000573903 KIAA0391O15091 583 aaKnown RBP13.08□□□□□ -0.32
CCDC40-210ENST00000573903 CKMP06732 381 aa13.08□□□□□ -0.32
CCDC40-210ENST00000573903 CCDC192P0DO97 292 aa13.08□□□□□ -0.32
CCDC40-210ENST00000573903 ACAT1P24752 427 aaKnown RBP13.08□□□□□ -0.32
CCDC40-210ENST00000573903 GPR15P49685 360 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms