RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 GCKP35557 465 aa17.97■□□□□ 0.47
VPS53-215ENST00000573028 MYL6P60660 151 aa17.97■□□□□ 0.47
VPS53-215ENST00000573028 OSTNP61366 133 aa17.97■□□□□ 0.47
VPS53-215ENST00000573028 EMC1Q8N766 993 aa17.97■□□□□ 0.47
VPS53-215ENST00000573028 FBXO36Q8NEA4 188 aa17.97■□□□□ 0.47
VPS53-215ENST00000573028 SLC7A6OSQ96CW6 309 aaPredicted RBP17.97■□□□□ 0.47
VPS53-215ENST00000573028 GMLQ99445 158 aa17.97■□□□□ 0.47
VPS53-215ENST00000573028 RNPEPL1Q9HAU8 725 aa17.97■□□□□ 0.47
VPS53-215ENST00000573028 VWA5AO00534 786 aa17.97■□□□□ 0.47
VPS53-215ENST00000573028 PLEKHG4Q58EX7 1191 aa17.97■□□□□ 0.47
VPS53-215ENST00000573028 CHMP2BQ9UQN3 213 aa17.97■□□□□ 0.47
VPS53-215ENST00000573028 CLUHO75153 1309 aa17.97■□□□□ 0.47
VPS53-215ENST00000573028 COL2A1P02458 1487 aaPredicted RBP17.97■□□□□ 0.47
VPS53-215ENST00000573028 TCRBV7S3A2A0A539 114 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 PEX11AO75192 247 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 ATP5HO75947 161 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 TBXAS1P24557 533 aaPredicted RBP17.96■□□□□ 0.47
VPS53-215ENST00000573028 ERFP50548 548 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 OASLQ15646 514 aaKnown RBP17.96■□□□□ 0.47
VPS53-215ENST00000573028 DPH6Q7L8W6 267 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 NAF1Q96HR8 494 aaKnown RBP17.96■□□□□ 0.47
VPS53-215ENST00000573028 SENP1Q9P0U3 644 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 NXF1Q9UBU9 619 aaKnown RBP17.96■□□□□ 0.47
VPS53-215ENST00000573028 C2orf71A6NGG8 1288 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 TYROBPO43914 113 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 DKC1O60832 514 aaKnown RBP eCLIP17.96■□□□□ 0.473e-11■■■□□ 15.6
VPS53-215ENST00000573028 TROVE2P10155 538 aaKnown RBP eCLIP17.96■□□□□ 0.47
VPS53-215ENST00000573028 CDKN2BP42772 138 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 TFAMQ00059 246 aaKnown RBP17.96■□□□□ 0.47
VPS53-215ENST00000573028 LRRC6Q86X45 466 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 TMEM35BQ8NCS4 154 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 TTC17Q96AE7 1141 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 FAXDC2Q96IV6 333 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 MAGEB2O15479 319 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 CALB1P05937 261 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 CD48P09326 243 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 CALB2P22676 271 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 RFC1P35251 1148 aaPredicted RBP17.96■□□□□ 0.47
VPS53-215ENST00000573028 HIRAP54198 1017 aaPredicted RBP17.96■□□□□ 0.47
VPS53-215ENST00000573028 ARL4CP56559 192 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 CAPRIN2Q6IMN6 1127 aaKnown RBP17.96■□□□□ 0.47
VPS53-215ENST00000573028 CDR2LQ86X02 465 aaPredicted RBP17.96■□□□□ 0.47
VPS53-215ENST00000573028 SLC7A3Q8WY07 619 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 GPRASP2Q96D09 838 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 CGRRF1Q99675 332 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 DENND2DQ9H6A0 471 aaPredicted RBP17.96■□□□□ 0.47
VPS53-215ENST00000573028 SYNCQ9H7C4 482 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 PCDH9Q9HC56 1237 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 PDLIM7Q9NR12 457 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 BATF3Q9NR55 127 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 RABGEF1Q9UJ41 708 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 NUMBLQ9Y6R0 609 aa17.96■□□□□ 0.47
VPS53-215ENST00000573028 STAM2O75886 525 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 RASSF2P50749 326 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 XKR3Q5GH77 459 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 TDRPQ86YL5 185 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 FAM71DQ8N9W8 422 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 NSUN6Q8TEA1 469 aaKnown RBP17.95■□□□□ 0.46
VPS53-215ENST00000573028 CISHQ9NSE2 258 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 SHOC2Q9UQ13 582 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 EGFRP00533 1210 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 PHBP35232 272 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 RFWD3Q6PCD5 774 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 APBB1IPQ7Z5R6 666 aaPredicted RBP17.95■□□□□ 0.46
VPS53-215ENST00000573028 FAM83AQ86UY5 434 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 ATP11CQ8NB49 1132 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 FLAD1Q8NFF5 587 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 RDM1Q8NG50 284 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 STK32AQ8WU08 396 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 TFAP2BQ92481 460 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 HSPH1Q92598 858 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 CALN1Q9BXU9 219 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 CYP39A1Q9NYL5 469 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 HEY2Q9UBP5 337 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 KAT6AQ92794 2004 aa17.95■□□□□ 0.46
VPS53-215ENST00000573028 H0YCG3 227 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 ABL2P42684 1182 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 CCDC6Q16204 474 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 PARP6Q2NL67 630 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 PRAMEF18Q5VWM3 479 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 RFX8Q6ZV50 586 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 JOSD2Q8TAC2 188 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 CPT1BQ92523 772 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 PTPRN2Q92932 1015 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 FBXO6Q9NRD1 293 aaPredicted RBP17.94■□□□□ 0.46
VPS53-215ENST00000573028 SLC24A2Q9UI40 661 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 IKBKGQ9Y6K9 419 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 RPL22P35268 128 aaKnown RBP17.94■□□□□ 0.46
VPS53-215ENST00000573028 CLDN10P78369 228 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 MCL1Q07820 350 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 TRPC3Q13507 836 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 RFX6Q8HWS3 928 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 OSBPL1AQ9BXW6 950 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 SP2Q02086 613 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 SLFN12LQ6IEE8 588 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 ABHD15Q6UXT9 468 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 CLNKQ7Z7G1 428 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 ZC3H18Q86VM9 953 aaKnown RBP17.94■□□□□ 0.46
VPS53-215ENST00000573028 UNC45BQ8IWX7 931 aa17.94■□□□□ 0.46
VPS53-215ENST00000573028 YIPF3Q9GZM5 350 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms