RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 MINDY1Q8N5J2 469 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 PNPLA1Q8N8W4 532 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 USP33Q8TEY7 942 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 WASF1Q92558 559 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 LARP6Q9BRS8 491 aaKnown RBP12.01□□□□□ -0.49
VPS53-207ENST00000570510 TRPC7Q9HCX4 862 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 SCUBE2Q9NQ36 999 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 KMT5AQ9NQR1 393 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 EML5Q05BV3 1969 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 NUP205Q92621 2012 aa12.01□□□□□ -0.49
VPS53-207ENST00000570510 ASCC3Q8N3C0 2202 aaKnown RBP12.01□□□□□ -0.49
VPS53-207ENST00000570510 KIF26AQ9ULI4 1882 aaPredicted RBP12□□□□□ -0.49
VPS53-207ENST00000570510 FAM205CA6NFA0 338 aa12□□□□□ -0.49
VPS53-207ENST00000570510 ZBTB24O43167 697 aaPredicted RBP12□□□□□ -0.49
VPS53-207ENST00000570510 MED24O75448 989 aa12□□□□□ -0.49
VPS53-207ENST00000570510 CAPNS1P04632 268 aa12□□□□□ -0.49
VPS53-207ENST00000570510 SERPINF2P08697 491 aa12□□□□□ -0.49
VPS53-207ENST00000570510 FTH1P19P0C7X4 201 aa12□□□□□ -0.49
VPS53-207ENST00000570510 TYMPP19971 482 aa12□□□□□ -0.49
VPS53-207ENST00000570510 ITPKAP23677 461 aa12□□□□□ -0.49
VPS53-207ENST00000570510 SPAG1Q07617 926 aa12□□□□□ -0.49
VPS53-207ENST00000570510 NR5A1Q13285 461 aa12□□□□□ -0.49
VPS53-207ENST00000570510 MTF1Q14872 753 aa12□□□□□ -0.49
VPS53-207ENST00000570510 SEZ6Q53EL9 994 aa12□□□□□ -0.49
VPS53-207ENST00000570510 EARS2Q5JPH6 523 aaKnown RBP12□□□□□ -0.49
VPS53-207ENST00000570510 CCNI2Q6ZMN8 369 aaPredicted RBP12□□□□□ -0.49
VPS53-207ENST00000570510 THEM5Q8N1Q8 247 aa12□□□□□ -0.49
VPS53-207ENST00000570510 OSCP1Q8WVF1 389 aa12□□□□□ -0.49
VPS53-207ENST00000570510 HMGB4Q8WW32 186 aa12□□□□□ -0.49
VPS53-207ENST00000570510 ADAMTS14Q8WXS8 1223 aa12□□□□□ -0.49
VPS53-207ENST00000570510 PNMA5Q96PV4 448 aa12□□□□□ -0.49
VPS53-207ENST00000570510 BHMT2Q9H2M3 363 aa12□□□□□ -0.49
VPS53-207ENST00000570510 TMEM134Q9H6X4 195 aa12□□□□□ -0.49
VPS53-207ENST00000570510 PTPRHQ9HD43 1115 aa12□□□□□ -0.49
VPS53-207ENST00000570510 FSCN3Q9NQT6 498 aa12□□□□□ -0.49
VPS53-207ENST00000570510 PILRBQ9UKJ0 227 aa12□□□□□ -0.49
VPS53-207ENST00000570510 MMP17Q9ULZ9 603 aa12□□□□□ -0.49
VPS53-207ENST00000570510 UBQLN1Q9UMX0 589 aaKnown RBP12□□□□□ -0.49
VPS53-207ENST00000570510 RBM19Q9Y4C8 960 aaKnown RBP12□□□□□ -0.49
VPS53-207ENST00000570510 ASH1LQ9NR48 2969 aaKnown RBP12□□□□□ -0.49
VPS53-207ENST00000570510 ARHGAP33O14559 1287 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 SH3BP5O60239 455 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 NFATC1O95644 943 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 CKMP06732 381 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 RPA1P27694 616 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 P2RY2P41231 377 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 NPTX2P47972 431 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 NLRP12P59046 1061 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 RPL6Q02878 288 aaKnown RBP11.99□□□□□ -0.49
VPS53-207ENST00000570510 PPP2R3AQ06190 1150 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 SMARCB1Q12824 385 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 NOLC1Q14978 699 aaKnown RBP eCLIP11.99□□□□□ -0.49
VPS53-207ENST00000570510 SLC10A6Q3KNW5 377 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 HAUS3Q68CZ6 603 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 ZNF605Q86T29 641 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 MON1AQ86VX9 555 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 C2orf15Q8WU43 125 aaKnown RBP11.99□□□□□ -0.49
VPS53-207ENST00000570510 FNBP1Q96RU3 617 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 UBL7Q96S82 380 aaPredicted RBP11.99□□□□□ -0.49
VPS53-207ENST00000570510 PLEKHA5Q9HAU0 1116 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 IL21Q9HBE4 155 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 GJB4Q9NTQ9 266 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 ABI2Q9NYB9 513 aaPredicted RBP11.99□□□□□ -0.49
VPS53-207ENST00000570510 WNT6Q9Y6F9 365 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 NUP210Q8TEM1 1887 aaPredicted RBP11.99□□□□□ -0.49
VPS53-207ENST00000570510 PCNX2A6NKB5 2137 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 CACNA1EQ15878 2313 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 IGSF10Q6WRI0 2623 aa11.99□□□□□ -0.49
VPS53-207ENST00000570510 TRIP11Q15643 1979 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 MYMKA6NI61 221 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 CLDN3O15551 220 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 TOM1L1O75674 476 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 USP17L7P0C7H9 530 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 CXCL8P10145 99 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 ATF6P18850 670 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 CYP3A5P20815 502 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 LRPAP1P30533 357 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 MCM7P33993 719 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 MRPS21P82921 87 aaKnown RBP11.98□□□□□ -0.49
VPS53-207ENST00000570510 FAM160A1Q05DH4 1040 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 SLC14A1Q13336 389 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 TOB2Q14106 344 aaPredicted RBP11.98□□□□□ -0.49
VPS53-207ENST00000570510 ZNF268Q14587 947 aaPredicted RBP11.98□□□□□ -0.49
VPS53-207ENST00000570510 EOGTQ5NDL2 527 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 EFCAB13Q8IY85 973 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 DEFB119Q8N690 84 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 SPPL2BQ8TCT7 592 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 EZH1Q92800 747 aaPredicted RBP11.98□□□□□ -0.49
VPS53-207ENST00000570510 FAM212AQ96EL1 285 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 BICD1Q96G01 975 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 SENP8Q96LD8 212 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 CAMK1GQ96NX5 476 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 KIF2CQ99661 725 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 UXTQ9UBK9 157 aaPredicted RBP11.98□□□□□ -0.49
VPS53-207ENST00000570510 DSEQ9UL01 958 aa11.98□□□□□ -0.49
VPS53-207ENST00000570510 TRAV19A0A0A6YYK7 116 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 KLF8O95600 359 aaPredicted RBP11.97□□□□□ -0.49
VPS53-207ENST00000570510 F11P03951 625 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 PRB1P04280 392 aa11.97□□□□□ -0.49
VPS53-207ENST00000570510 CLTAP09496 248 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms