RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 HDDC3Q8N4P3 179 aa18.23■□□□□ 0.51
CDH3-205ENST00000566808 CHCHD4Q8N4Q1 142 aa18.23■□□□□ 0.51
CDH3-205ENST00000566808 USP33Q8TEY7 942 aa18.23■□□□□ 0.51
CDH3-205ENST00000566808 C2orf15Q8WU43 125 aaKnown RBP18.23■□□□□ 0.51
CDH3-205ENST00000566808 DRC1Q96MC2 740 aa18.23■□□□□ 0.51
CDH3-205ENST00000566808 TM6SF1Q9BZW5 370 aa18.23■□□□□ 0.51
CDH3-205ENST00000566808 MMP17Q9ULZ9 603 aa18.23■□□□□ 0.51
CDH3-205ENST00000566808 TTC26A0AVF1 554 aa18.22■□□□□ 0.51
CDH3-205ENST00000566808 NMT1P30419 496 aaKnown RBP18.22■□□□□ 0.51
CDH3-205ENST00000566808 MCM7P33993 719 aa18.22■□□□□ 0.51
CDH3-205ENST00000566808 SCAPQ12770 1279 aa18.22■□□□□ 0.51
CDH3-205ENST00000566808 HNRNPDQ14103 355 aaKnown RBP18.22■□□□□ 0.51
CDH3-205ENST00000566808 SEZ6Q53EL9 994 aa18.22■□□□□ 0.51
CDH3-205ENST00000566808 SLC23A3Q6PIS1 610 aa18.22■□□□□ 0.51
CDH3-205ENST00000566808 SKAP1Q86WV1 359 aa18.22■□□□□ 0.51
CDH3-205ENST00000566808 DIS3L2Q8IYB7 885 aaKnown RBP18.22■□□□□ 0.51
CDH3-205ENST00000566808 DAW1Q8N136 415 aa18.22■□□□□ 0.51
CDH3-205ENST00000566808 OLIG1Q8TAK6 271 aa18.22■□□□□ 0.51
CDH3-205ENST00000566808 MRPS31Q92665 395 aaKnown RBP18.22■□□□□ 0.51
CDH3-205ENST00000566808 ZBTB45Q96K62 511 aaPredicted RBP18.22■□□□□ 0.51
CDH3-205ENST00000566808 SCN1AP35498 2009 aa18.22■□□□□ 0.51
CDH3-205ENST00000566808 CFAP46Q8IYW2 2715 aa18.22■□□□□ 0.51
CDH3-205ENST00000566808 ANAPC1Q9H1A4 1944 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 BTBD18B2RXH4 712 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 PFKFB2O60825 505 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 ALDH1A2O94788 518 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 PAX3P23760 479 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 ATXN3P54252 364 aaPredicted RBP18.21■□□□□ 0.51
CDH3-205ENST00000566808 PPP2R3AQ06190 1150 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 SPAG1Q07617 926 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 MCL1Q07820 350 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 SMARCB1Q12824 385 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 STRN3Q13033 797 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 USP4Q13107 963 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 ZBTB6Q15916 424 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 SPDYCQ5MJ68 293 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 PEAR1Q5VY43 1037 aaPredicted RBP18.21■□□□□ 0.51
CDH3-205ENST00000566808 TXNDC8Q6A555 127 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 MON1AQ86VX9 555 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 SPPL2BQ8TCT7 592 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 GIPC2Q8TF65 315 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 OSCP1Q8WVF1 389 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 ZCWPW1Q9H0M4 648 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 C17orf75Q9HAS0 396 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 DUS2Q9NX74 493 aaKnown RBP18.21■□□□□ 0.51
CDH3-205ENST00000566808 PLXNB3Q9ULL4 1909 aa18.21■□□□□ 0.51
CDH3-205ENST00000566808 EIF4E1BA6NMX2 242 aaKnown RBP18.2■□□□□ 0.5
CDH3-205ENST00000566808 DTNBO60941 627 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 HIP1RO75146 1068 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 CTDNEP1O95476 244 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 F11P03951 625 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 CYP11A1P05108 521 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 CLTAP09496 248 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 OR52Z1P0C646 297 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 HMGA1P17096 107 aaKnown RBP18.2■□□□□ 0.5
CDH3-205ENST00000566808 CCT6AP40227 531 aaKnown RBP18.2■□□□□ 0.5
CDH3-205ENST00000566808 P2RY2P41231 377 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 PTGER3P43115 390 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 IFNAR2P48551 515 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 LILRA4P59901 499 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 FAM160A1Q05DH4 1040 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 ZNF77Q15935 545 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 CRY1Q16526 586 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 LYSMD4Q5XG99 296 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 ZPBP2Q6X784 338 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 ARMCX6Q7L4S7 300 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 WHAMMQ8TF30 809 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 SENP8Q96LD8 212 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 PDRG1Q9NUG6 133 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 TMEM74BQ9NUR3 256 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 TENM4Q6N022 2769 aa18.2■□□□□ 0.5
CDH3-205ENST00000566808 ATXN2Q99700 1313 aaKnown RBP18.2■□□□□ 0.5
CDH3-205ENST00000566808 ASXL3Q9C0F0 2248 aa18.19■□□□□ 0.5
CDH3-205ENST00000566808 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.19■□□□□ 0.5
CDH3-205ENST00000566808 SLC16A4O15374 487 aa18.19■□□□□ 0.5
CDH3-205ENST00000566808 CLDN3O15551 220 aa18.19■□□□□ 0.5
CDH3-205ENST00000566808 CFIP05156 583 aa18.19■□□□□ 0.5
CDH3-205ENST00000566808 IRX6P78412 446 aaPredicted RBP18.19■□□□□ 0.5
CDH3-205ENST00000566808 NR1H3Q13133 447 aa18.19■□□□□ 0.5
CDH3-205ENST00000566808 ORC2Q13416 577 aaPredicted RBP18.19■□□□□ 0.5
CDH3-205ENST00000566808 ECM1Q16610 540 aa18.19■□□□□ 0.5
CDH3-205ENST00000566808 EML3Q32P44 896 aa18.19■□□□□ 0.5
CDH3-205ENST00000566808 C2orf27AQ580R0 203 aa18.19■□□□□ 0.5
CDH3-205ENST00000566808 TMEFF1Q8IYR6 380 aa18.19■□□□□ 0.5
CDH3-205ENST00000566808 BBC3Q96PG8 261 aaPredicted RBP18.19■□□□□ 0.5
CDH3-205ENST00000566808 FNBP1Q96RU3 617 aa18.19■□□□□ 0.5
CDH3-205ENST00000566808 TSPAN18Q96SJ8 248 aa18.19■□□□□ 0.5
CDH3-205ENST00000566808 CCDC86Q9H6F5 360 aaKnown RBP18.19■□□□□ 0.5
CDH3-205ENST00000566808 TMEM206Q9H813 350 aa18.19■□□□□ 0.5
CDH3-205ENST00000566808 ABI2Q9NYB9 513 aaPredicted RBP18.19■□□□□ 0.5
CDH3-205ENST00000566808 PILRBQ9UKJ0 227 aa18.19■□□□□ 0.5
CDH3-205ENST00000566808 DSEQ9UL01 958 aa18.19■□□□□ 0.5
CDH3-205ENST00000566808 WNT6Q9Y6F9 365 aa18.19■□□□□ 0.5
CDH3-205ENST00000566808 URB1O60287 2271 aaKnown RBP18.18■□□□□ 0.5
CDH3-205ENST00000566808 PPEF2O14830 753 aa18.18■□□□□ 0.5
CDH3-205ENST00000566808 MAP3K13O43283 966 aa18.18■□□□□ 0.5
CDH3-205ENST00000566808 EPB41L2O43491 1005 aaKnown RBP18.18■□□□□ 0.5
CDH3-205ENST00000566808 OPHN1O60890 802 aa18.18■□□□□ 0.5
CDH3-205ENST00000566808 ZIC2O95409 532 aaPredicted RBP18.18■□□□□ 0.5
CDH3-205ENST00000566808 HAPLN1P10915 354 aaPredicted RBP18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms