RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 PROSER1Q86XN7 944 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 HDDC3Q8N4P3 179 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 CHCHD4Q8N4Q1 142 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 MRPS31Q92665 395 aaKnown RBP7.94□□□□□ -1.14
VPS4A-203ENST00000564399 SENP8Q96LD8 212 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 TM6SF1Q9BZW5 370 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 ECT2Q9H8V3 914 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 PLEKHA5Q9HAU0 1116 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 DDX19AQ9NUU7 478 aaKnown RBP7.94□□□□□ -1.14
VPS4A-203ENST00000564399 DUS2Q9NX74 493 aaKnown RBP7.94□□□□□ -1.14
VPS4A-203ENST00000564399 ARHGAP28Q9P2N2 729 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 HSFX1Q9UBD0 423 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 EVLQ9UI08 416 aaPredicted RBP7.94□□□□□ -1.14
VPS4A-203ENST00000564399 TBX20Q9UMR3 447 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 MAGED2Q9UNF1 606 aaPredicted RBP7.94□□□□□ -1.14
VPS4A-203ENST00000564399 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.94□□□□□ -1.14
VPS4A-203ENST00000564399 CABIN1Q9Y6J0 2220 aa7.94□□□□□ -1.14
VPS4A-203ENST00000564399 ITPR1Q14643 2758 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 TTC26A0AVF1 554 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 SFI1A8K8P3 1242 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 PPEF2O14830 753 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 ALDH1A2O94788 518 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 CTDNEP1O95476 244 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 CFIP05156 583 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 CLTAP09496 248 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 FDPSP14324 419 aaKnown RBP7.93□□□□□ -1.14
VPS4A-203ENST00000564399 ENGP17813 658 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 CYP3A5P20815 502 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 DDX6P26196 483 aaKnown RBP eCLIP7.93□□□□□ -1.14
VPS4A-203ENST00000564399 AARSP49588 968 aaKnown RBP eCLIP7.93□□□□□ -1.14
VPS4A-203ENST00000564399 NLRP12P59046 1061 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 LILRA4P59901 499 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 PPP2R3AQ06190 1150 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 SCAPQ12770 1279 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 MTF1Q14872 753 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 ECM1Q16610 540 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 COL28A1Q2UY09 1125 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 MON1AQ86VX9 555 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 RASSF3Q86WH2 238 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 METTL23Q86XA0 190 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 SYT12Q8IV01 421 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 TMEFF1Q8IYR6 380 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 THEM5Q8N1Q8 247 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 CCDC33Q8N5R6 958 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 OR10T2Q8NGX3 314 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 SPPL2BQ8TCT7 592 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 RLN3Q8WXF3 142 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 EZH1Q92800 747 aaPredicted RBP7.93□□□□□ -1.14
VPS4A-203ENST00000564399 ATP2A3Q93084 1043 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 FAM212AQ96EL1 285 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 BICD1Q96G01 975 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 CNOT6LQ96LI5 555 aaKnown RBP7.93□□□□□ -1.14
VPS4A-203ENST00000564399 DRC1Q96MC2 740 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 GTPBP2Q9BX10 602 aaKnown RBP7.93□□□□□ -1.14
VPS4A-203ENST00000564399 ABI2Q9NYB9 513 aaPredicted RBP7.93□□□□□ -1.14
VPS4A-203ENST00000564399 LRWD1Q9UFC0 647 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 GPSM3Q9Y4H4 160 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 ANAPC1Q9H1A4 1944 aa7.93□□□□□ -1.14
VPS4A-203ENST00000564399 NAV2Q8IVL1 2488 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 TNRC6BQ9UPQ9 1833 aaKnown RBP7.92□□□□□ -1.14
VPS4A-203ENST00000564399 PLXNB3Q9ULL4 1909 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 LACTBL1A8MY62 500 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 E9PMD0 336 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 TNFRSF10BO14763 440 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 OPHN1O60890 802 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 F11P03951 625 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 HAPLN1P10915 354 aaPredicted RBP7.92□□□□□ -1.14
VPS4A-203ENST00000564399 TNFSF9P41273 254 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 PTGER3P43115 390 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 SMTNP53814 917 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 FAM160A1Q05DH4 1040 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 MCL1Q07820 350 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 SEMA3BQ13214 749 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 ZNF268Q14587 947 aaPredicted RBP7.92□□□□□ -1.14
VPS4A-203ENST00000564399 SAFBQ15424 915 aaKnown RBP eCLIP7.92□□□□□ -1.14
VPS4A-203ENST00000564399 ZBTB6Q15916 424 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 ZNF423Q2M1K9 1284 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 LMBRD2Q68DH5 695 aaPredicted RBP7.92□□□□□ -1.14
VPS4A-203ENST00000564399 PIP4P1Q86T03 277 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 TMEM150AQ86TG1 271 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 DAW1Q8N136 415 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 PGBD3Q8N328 593 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 NECAB1Q8N987 351 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 MDGA1Q8NFP4 955 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 RIN3Q8TB24 985 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 SNX29Q8TEQ0 813 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 USP33Q8TEY7 942 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 C2orf15Q8WU43 125 aaKnown RBP7.92□□□□□ -1.14
VPS4A-203ENST00000564399 OSCP1Q8WVF1 389 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 SPACA7Q96KW9 195 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 RUSC1Q9BVN2 902 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 ZCWPW1Q9H0M4 648 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 RPF1Q9H9Y2 349 aaKnown RBP7.92□□□□□ -1.14
VPS4A-203ENST00000564399 C17orf75Q9HAS0 396 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 TRPC7Q9HCX4 862 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 TMEM74BQ9NUR3 256 aa7.92□□□□□ -1.14
VPS4A-203ENST00000564399 BCCIPQ9P287 314 aaKnown RBP eCLIP7.92□□□□□ -1.14
VPS4A-203ENST00000564399 MBD1Q9UIS9 605 aaPredicted RBP7.92□□□□□ -1.14
VPS4A-203ENST00000564399 DSEQ9UL01 958 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms