RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 MNAT1P51948 309 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 AP2B1P63010 937 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 CTAG1AP78358 180 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 ABHD18Q0P651 414 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 TMEM94Q12767 1356 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 PPP2R5CQ13362 524 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 STAT4Q14765 748 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.61□□□□□ -1.51
VPS35-205ENST00000563984 GPRASP1Q5JY77 1395 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 ABRAXAS1Q6UWZ7 409 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 C14orf80Q86SX3 495 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 RSPH3Q86UC2 560 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 FAM83AQ86UY5 434 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 AFAP1Q8N556 730 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 MB21D1Q8N884 522 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 GLB1L3Q8NCI6 653 aaPredicted RBP5.61□□□□□ -1.51
VPS35-205ENST00000563984 MSANTD4Q8NCY6 345 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 SNX33Q8WV41 574 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 CLMNQ96JQ2 1002 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 NELL2Q99435 816 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 EPC1Q9H2F5 836 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 NRDE2Q9H7Z3 1164 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 PIH1D1Q9NWS0 290 aaKnown RBP5.61□□□□□ -1.51
VPS35-205ENST00000563984 TUBA8Q9NY65 449 aaPredicted RBP5.61□□□□□ -1.51
VPS35-205ENST00000563984 STAP2Q9UGK3 403 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 C2CD2Q9Y426 696 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 DAAM1Q9Y4D1 1078 aa5.61□□□□□ -1.51
VPS35-205ENST00000563984 V9GYY5 206 aaPredicted RBP5.61□□□□□ -1.51
VPS35-205ENST00000563984 PCSK5Q92824 1860 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 PEG3Q9GZU2 1588 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 CGNL1Q0VF96 1302 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 WDR33Q9C0J8 1336 aaKnown RBP5.6□□□□□ -1.51
VPS35-205ENST00000563984 A0A1B0GUL7 405 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 GOLGA8AA7E2F4 631 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 RASA4BC9J798 803 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 PRAMEF4O60810 478 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 RHOBTB3O94955 611 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 SNUPNO95149 360 aaKnown RBP5.6□□□□□ -1.51
VPS35-205ENST00000563984 MTHFD2P13995 350 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 TNFAIP3P21580 790 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 CNGA1P29973 690 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 MCM7P33993 719 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 CA8P35219 290 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 NF2P35240 595 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 HALP42357 657 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 NANOS3P60323 173 aaKnown RBP5.6□□□□□ -1.51
VPS35-205ENST00000563984 KRT83P78385 493 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 MRPS9P82933 396 aaKnown RBP5.6□□□□□ -1.51
VPS35-205ENST00000563984 LRRC74AQ0VAA2 488 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 RABEP1Q15276 862 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 RCN1Q15293 331 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 SH2D4BQ5SQS7 431 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 AKNAD1Q5T1N1 836 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 C1QL3Q5VWW1 255 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 SPATA1Q5VX52 437 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 MZT2BQ6NZ67 158 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 RTL10Q7L3V2 364 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 DOK3Q7L591 496 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 ARMC9Q7Z3E5 817 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 SDCCAG8Q86SQ7 713 aaPredicted RBP5.6□□□□□ -1.51
VPS35-205ENST00000563984 RNF168Q8IYW5 571 aaPredicted RBP5.6□□□□□ -1.51
VPS35-205ENST00000563984 ENAHQ8N8S7 591 aaPredicted RBP5.6□□□□□ -1.51
VPS35-205ENST00000563984 TNIP2Q8NFZ5 429 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 OR8H1Q8NGG4 311 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 LMBR1Q8WVP7 490 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 NEU4Q8WWR8 484 aaPredicted RBP5.6□□□□□ -1.51
VPS35-205ENST00000563984 SNX21Q969T3 373 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 ORAI2Q96SN7 254 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 CPPED1Q9BRF8 314 aaPredicted RBP5.6□□□□□ -1.51
VPS35-205ENST00000563984 HERPUD2Q9BSE4 406 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 TNMDQ9H2S6 317 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 FANCFQ9NPI8 374 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 TCP11L1Q9NUJ3 509 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 MRGBPQ9NV56 204 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 MTUS1Q9ULD2 1270 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 SSX2IPQ9Y2D8 614 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 TTLL3Q9Y4R7 772 aa5.6□□□□□ -1.51
VPS35-205ENST00000563984 KDRP35968 1356 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 PHLDB1Q86UU1 1377 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 RPTORQ8N122 1335 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 AKR1B15C9JRZ8 316 aaPredicted RBP5.59□□□□□ -1.51
VPS35-205ENST00000563984 TOR1BO14657 336 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 POLR3GO15318 223 aaPredicted RBP5.59□□□□□ -1.51
VPS35-205ENST00000563984 RASA4O43374 803 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 DIAPH2O60879 1101 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 PHF2O75151 1096 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 TMEM127O75204 238 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 ALDH1L1O75891 902 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 GASTP01350 101 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 RPS2P15880 293 aaKnown RBP5.59□□□□□ -1.51
VPS35-205ENST00000563984 MAKP20794 623 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 CTSSP25774 331 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 ATP6V1E1P36543 226 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 NEK2P51955 445 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 TUBA1BP68363 451 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 CBX1P83916 185 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 AKAP17AQ02040 695 aaKnown RBP5.59□□□□□ -1.51
VPS35-205ENST00000563984 APBA1Q02410 837 aa5.59□□□□□ -1.51
VPS35-205ENST00000563984 TOB2Q14106 344 aaPredicted RBP5.59□□□□□ -1.51
VPS35-205ENST00000563984 LRRC41Q15345 812 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms