RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 EIF2AQ9BY44 585 aaKnown RBP9.5□□□□□ -0.89
VPS39-207ENST00000563692 ZNF518BQ9C0D4 1074 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 THAP2Q9H0W7 228 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 XYLT2Q9H1B5 865 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 UVRAGQ9P2Y5 699 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 KIAA1257Q9ULG3 409 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 UBQLN1Q9UMX0 589 aaKnown RBP9.5□□□□□ -0.89
VPS39-207ENST00000563692 CEP83Q9Y592 693 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 PTPRSQ13332 1948 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 NCANO14594 1321 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 GRID2IPA4D2P6 1211 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 CES2O00748 559 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 LSM8O95777 96 aaKnown RBP9.49□□□□□ -0.89
VPS39-207ENST00000563692 CYP1A1P04798 512 aaPredicted RBP9.49□□□□□ -0.89
VPS39-207ENST00000563692 WEE2P0C1S8 567 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 FGFR1P11362 822 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 UNGP13051 313 aaPredicted RBP9.49□□□□□ -0.89
VPS39-207ENST00000563692 LAG3P18627 525 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 CD58P19256 250 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 CYP3A5P20815 502 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 POLR2BP30876 1174 aaKnown RBP9.49□□□□□ -0.89
VPS39-207ENST00000563692 PNPLA4P41247 253 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 GATMP50440 423 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 FAM189BP81408 668 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 DSC3Q14574 896 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 CLUL1Q15846 466 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 LEXMQ3ZCV2 418 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 ALKAL1Q6UXT8 129 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 SLFN11Q7Z7L1 901 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 CRIPAKQ8N1N5 446 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 LRRC43Q8N309 656 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 GPR161Q8N6U8 529 aaKnown RBP9.49□□□□□ -0.89
VPS39-207ENST00000563692 LRRC52Q8N7C0 313 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 UBR7Q8N806 425 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 KLHL23Q8NBE8 558 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 TMEM35BQ8NCS4 154 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 MICAL1Q8TDZ2 1067 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 ZNF606Q8WXB4 792 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 RSPH1Q8WYR4 309 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 RABGGTAQ92696 567 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 ELMO3Q96BJ8 720 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 PABPC5Q96DU9 382 aaKnown RBP9.49□□□□□ -0.89
VPS39-207ENST00000563692 FAM84AQ96KN4 292 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 SNX27Q96L92 541 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 BCO2Q9BYV7 579 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 MRPL47Q9HD33 250 aaKnown RBP9.49□□□□□ -0.89
VPS39-207ENST00000563692 ALG13Q9NP73 1137 aaKnown RBP9.49□□□□□ -0.89
VPS39-207ENST00000563692 ACP6Q9NPH0 428 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 CLDND1Q9NY35 253 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 TAS2R14Q9NYV8 317 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 CNTN3Q9P232 1028 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 LCMT1Q9UIC8 334 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 SIX4Q9UIU6 781 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 GTF3C4Q9UKN8 822 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 EVPLQ92817 2033 aa9.49□□□□□ -0.89
VPS39-207ENST00000563692 A0A0U1RQF3 1178 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 SRGAP2O75044 1071 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 TADA3O75528 432 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 RECQL4O94761 1208 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 MTA2O94776 668 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 EOMESO95936 686 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 FTCDO95954 541 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 CYP1A2P05177 515 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 LINC00271P0C7V0 271 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 ITGA4P13612 1032 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 KCNE1P15382 129 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 AKAP5P24588 427 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 PPM1AP35813 382 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 ASPAP45381 313 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 RAB27AP51159 221 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 ZNF132P52740 706 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 KRT17Q04695 432 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 UBE3AQ05086 875 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 ZBTB6Q15916 424 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 ERCC6LQ2NKX8 1250 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 XKR4Q5GH76 650 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 UBXN11Q5T124 520 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 RSRC2Q7L4I2 434 aaKnown RBP9.48□□□□□ -0.89
VPS39-207ENST00000563692 MTERF4Q7Z6M4 381 aaKnown RBP9.48□□□□□ -0.89
VPS39-207ENST00000563692 ECHDC2Q86YB7 292 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 PALB2Q86YC2 1186 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 MCOLN2Q8IZK6 566 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 UBL4BQ8N7F7 174 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 LRRC57Q8N9N7 239 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 MSANTD4Q8NCY6 345 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 OLIG1Q8TAK6 271 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 POF1BQ8WVV4 589 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 ZNF653Q96CK0 615 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 CYFIP2Q96F07 1278 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 CAPZA3Q96KX2 299 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 NECAB3Q96P71 396 aaPredicted RBP9.48□□□□□ -0.89
VPS39-207ENST00000563692 RPS6KC1Q96S38 1066 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 MMS19Q96T76 1030 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 APOL6Q9BWW8 343 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 TLR10Q9BXR5 811 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 MRPL9Q9BYD2 267 aaKnown RBP9.48□□□□□ -0.89
VPS39-207ENST00000563692 UBN1Q9NPG3 1134 aa9.48□□□□□ -0.89
VPS39-207ENST00000563692 AVENQ9NQS1 362 aaPredicted RBP9.48□□□□□ -0.89
VPS39-207ENST00000563692 ARGLU1Q9NWB6 273 aaPredicted RBP9.48□□□□□ -0.89
VPS39-207ENST00000563692 CNOT8Q9UFF9 292 aaKnown RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms