RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CRYBG2Q8N1P7 616 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 ARFGAP2Q8N6H7 521 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 KLHDC9Q8NEP7 349 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 RAET1EQ8TD07 263 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 CPA5Q8WXQ8 436 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 MAGOHBQ96A72 148 aaKnown RBP7.94□□□□□ -1.14
VPS39-204ENST00000561818 CPB2Q96IY4 423 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 HEXIM2Q96MH2 286 aaKnown RBP7.94□□□□□ -1.14
VPS39-204ENST00000561818 PNKPQ96T60 521 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 FMO2Q99518 471 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 ERP44Q9BS26 406 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 CNPY3Q9BT09 278 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 LRRC1Q9BTT6 524 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 FRMD8Q9BZ67 464 aaPredicted RBP7.94□□□□□ -1.14
VPS39-204ENST00000561818 SENP6Q9GZR1 1112 aaPredicted RBP7.94□□□□□ -1.14
VPS39-204ENST00000561818 R3HDMLQ9H3Y0 253 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 EPB41L5Q9HCM4 733 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 FLRT1Q9NZU1 646 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 KANSL3Q9P2N6 904 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 DDX20Q9UHI6 824 aaKnown RBP7.94□□□□□ -1.14
VPS39-204ENST00000561818 COG5Q9UP83 839 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 GINS2Q9Y248 185 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 EVPLQ92817 2033 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 CFAP69A5D8W1 941 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 M0QYV0 167 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 PIRO00625 290 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 DPYSL4O14531 572 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 INPPL1O15357 1258 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 TREHO43280 583 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 HOXA2O43364 376 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 ADAMTS4O75173 837 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 EOMESO95936 686 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 THP07101 528 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 GJB1P08034 283 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 ITIH2P19823 946 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 WARSP23381 471 aaKnown RBP7.93□□□□□ -1.14
VPS39-204ENST00000561818 PSMC1P62191 440 aaKnown RBP7.93□□□□□ -1.14
VPS39-204ENST00000561818 GRIK3Q13003 919 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 PDCLQ13371 301 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 TFDP2Q14188 446 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 PDK2Q15119 407 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 BOLA3Q53S33 107 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 EFHC1Q5JVL4 640 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 ACBD5Q5T8D3 534 aaPredicted RBP7.93□□□□□ -1.14
VPS39-204ENST00000561818 MAP3K21Q5TCX8 1036 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 CCDC137Q6PK04 289 aaKnown RBP7.93□□□□□ -1.14
VPS39-204ENST00000561818 SCARA5Q6ZMJ2 495 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 ZNF365Q70YC5 407 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 MRPL10Q7Z7H8 261 aaKnown RBP7.93□□□□□ -1.14
VPS39-204ENST00000561818 METTL23Q86XA0 190 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 PALB2Q86YC2 1186 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 CCDC50Q8IVM0 306 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 CCDC105Q8IYK2 499 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 CEP120Q8N960 986 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 ANKRD52Q8NB46 1076 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 SLC4A11Q8NBS3 891 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 LRRN4CLQ8ND94 238 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 ATL2Q8NHH9 583 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 CXorf38Q8TB03 319 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 TEKT4Q8WW24 435 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 TRIB2Q92519 343 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 C18orf25Q96B23 403 aaPredicted RBP7.93□□□□□ -1.14
VPS39-204ENST00000561818 MCRS1Q96EZ8 462 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 CAPNS2Q96L46 248 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 UBXN6Q9BZV1 441 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 RSAD1Q9HA92 442 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 HMX1Q9NP08 348 aaPredicted RBP7.93□□□□□ -1.14
VPS39-204ENST00000561818 PNPLA8Q9NP80 782 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 FAM105AQ9NUU6 356 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 SNTG2Q9NY99 539 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 WHRNQ9P202 907 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 RCOR3Q9P2K3 495 aaPredicted RBP7.93□□□□□ -1.14
VPS39-204ENST00000561818 IPPQ9Y573 584 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 PTCH2Q9Y6C5 1203 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 CDY2AQ9Y6F7 541 aa7.93□□□□□ -1.14
VPS39-204ENST00000561818 SMIM28A0A1B0GU29 152 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 TTLL13PA6NNM8 815 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 TMEM110-MUSTN1A8MSY1 372 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 A8MXQ7 604 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 KBTBD13C9JR72 458 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 KIF3CO14782 793 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 RAD51CO43502 376 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 TRAPPC3O43617 180 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 MICAL2O94851 1124 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 ODC1P11926 461 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 BRD2P25440 801 aaKnown RBP7.92□□□□□ -1.14
VPS39-204ENST00000561818 PSMA2P25787 234 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 HSPA9P38646 679 aaKnown RBP7.92□□□□□ -1.14
VPS39-204ENST00000561818 DNA2P51530 1060 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 APLP1P51693 650 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 ZNF143P52747 638 aaPredicted RBP7.92□□□□□ -1.14
VPS39-204ENST00000561818 NDST1P52848 882 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 WNT7BP56706 349 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 PRKCZQ05513 592 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 SMARCB1Q12824 385 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 NFX1Q12986 1120 aaKnown RBP7.92□□□□□ -1.14
VPS39-204ENST00000561818 BFSP2Q13515 415 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 NAA30Q147X3 362 aaPredicted RBP7.92□□□□□ -1.14
VPS39-204ENST00000561818 PPP1R7Q15435 360 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 CCL14Q16627 93 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms