RNA–Protein interactions for RNA: ENST00000560243.5

RABGGTA-216, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 5

Gene RABGGTA, Length 704 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-216ENST00000560243 WNT16Q9UBV4 365 aa12.48□□□□□ -0.41
RABGGTA-216ENST00000560243 CIZ1Q9ULV3 898 aaPredicted RBP12.48□□□□□ -0.41
RABGGTA-216ENST00000560243 ASB3Q9Y575 518 aa12.48□□□□□ -0.41
RABGGTA-216ENST00000560243 PCDHA5Q9Y5H7 936 aa12.48□□□□□ -0.41
RABGGTA-216ENST00000560243 PTPRDP23468 1912 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 ECI2O75521 394 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 KIF20AO95235 890 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 TRIM49P0CI25 452 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 TRIM49CP0CI26 452 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 HMGA1P17096 107 aaKnown RBP12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 WARSP23381 471 aaKnown RBP12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 GABRR2P28476 465 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 PCSK1P29120 753 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 PRCPP42785 496 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 RAP1GAPP47736 663 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 SMARCB1Q12824 385 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 NCOA4Q13772 614 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 GRM2Q14416 872 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 NFE2Q16621 373 aaPredicted RBP12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 NFIL3Q16649 462 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 ISM2Q6H9L7 571 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 FAM171BQ6P995 826 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 SV2AQ7L0J3 742 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 LEMD2Q8NC56 503 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 PRSS33Q8NF86 280 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 SPATA20Q8TB22 786 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 ZSCAN18Q8TBC5 510 aaPredicted RBP12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 SPATA18Q8TC71 538 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 TMC2Q8TDI7 906 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 SMARCD2Q92925 531 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 RSPRY1Q96DX4 576 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 TIGD1Q96MW7 591 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 SYT15Q9BQS2 421 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 MKNK1Q9BUB5 465 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 DPEP3Q9H4B8 488 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 SMYD3Q9H7B4 428 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 FRMD4BQ9Y2L6 1034 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 F5P12259 2224 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 PIEZO1Q92508 2521 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 DENND4CQ5VZ89 1909 aa12.47□□□□□ -0.41
RABGGTA-216ENST00000560243 OBSL1O75147 1896 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 STAU1O95793 577 aaKnown RBP12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 GNL1P36915 607 aaPredicted RBP12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 VAMP7P51809 220 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 PMS1P54277 932 aaKnown RBP12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 CDH8P55286 799 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 TNNC1P63316 161 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 CYP4F8P98187 520 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 PPP3CAQ08209 521 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 ADAM9Q13443 819 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 VEPH1Q14D04 833 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 ZNF699Q32M78 642 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 ZACNQ401N2 412 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 ZNF658Q5TYW1 1059 aaPredicted RBP12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 ASTLQ6HA08 431 aaPredicted RBP12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 SCARA5Q6ZMJ2 495 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 TMEM150AQ86TG1 271 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 ITIH5Q86UX2 942 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 FAM186BQ8IYM0 893 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 OR6B3Q8NGW1 331 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 SMARCE1Q969G3 411 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 MYLPFQ96A32 169 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 SYAP1Q96A49 352 aaPredicted RBP12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 ELSPBP1Q96BH3 223 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 CCDC34Q96HJ3 373 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 GSDMAQ96QA5 445 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 SDCBP2Q9H190 292 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 ATXN3LQ9H3M9 355 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 SLITRK6Q9H5Y7 841 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 ZFP14Q9HCL3 533 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 ABCB6Q9NP58 842 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 ARHGEF3Q9NR81 526 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 RMND1Q9NWS8 449 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 CDH9Q9ULB4 789 aa12.46□□□□□ -0.41
RABGGTA-216ENST00000560243 GREB1Q4ZG55 1949 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 MAPK13O15264 365 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 LRRN2O75325 713 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 TACC1O75410 805 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 SMC2O95347 1197 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 ATICP31939 592 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 GCLMP48507 274 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 CLCN5P51795 746 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 AP3M2P53677 418 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 CFAP221Q4G0U5 840 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 MDH1BQ5I0G3 518 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 GPR158Q5T848 1215 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 SPOPLQ6IQ16 392 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 VITQ6UXI7 678 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 SPATA2LQ8IUW3 424 aaPredicted RBP12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 SCN4BQ8IWT1 228 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 PCED1BQ96HM7 432 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 LRRC3BQ96PB8 259 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 SNX25Q9H3E2 840 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 MMRN2Q9H8L6 949 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 VRTNQ9H8Y1 702 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 TBC1D17Q9HA65 648 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 TRPV4Q9HBA0 871 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 CHMP5Q9NZZ3 219 aa12.45□□□□□ -0.42
RABGGTA-216ENST00000560243 MAN1B1Q9UKM7 699 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms