RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 MYL7Q01449 175 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 TNK2Q07912 1038 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 BFSP1Q12934 665 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 GAS6Q14393 721 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 PON2Q15165 354 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 STK38Q15208 465 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 RSPO4Q2I0M5 234 aaPredicted RBP11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 TXNDC11Q6PKC3 985 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 STXBP4Q6ZWJ1 553 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 CCDC65Q8IXS2 484 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 CMTM8Q8IZV2 173 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 TMEM86AQ8N2M4 240 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 GPD1LQ8N335 351 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 LRRC52Q8N7C0 313 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 MAB21L3Q8N8X9 362 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 ACBD6Q9BR61 282 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 CBWD1Q9BRT8 395 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 SMG9Q9H0W8 520 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 TMLHEQ9NVH6 421 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 GMEB2Q9UKD1 530 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 L1RE1Q9UN81 338 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 MAGED2Q9UNF1 606 aaPredicted RBP11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 R3HCC1Q9Y3T6 440 aaKnown RBP11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 SNX9Q9Y5X1 595 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 GPR179Q6PRD1 2367 aa11.91□□□□□ -0.5
CCDC88C-213ENST00000557455 CEP250Q9BV73 2442 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 ANAPC1Q9H1A4 1944 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 F11P03951 625 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 HMGA1P17096 107 aaKnown RBP11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 ACAT1P24752 427 aaKnown RBP11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 DDX6P26196 483 aaKnown RBP eCLIP11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 NASPP49321 788 aaPredicted RBP11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 GPR15P49685 360 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 NLRP12P59046 1061 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 RBP5P82980 135 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 LPAL2Q16609 132 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 ITPRIPL2Q3MIP1 535 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 WDR44Q5JSH3 913 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 INTS6LQ5JSJ4 861 aaKnown RBP11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 PRR23BQ6ZRT6 265 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 TMEM150AQ86TG1 271 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 SYNPOQ8N3V7 929 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 LEO1Q8WVC0 666 aaPredicted RBP11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 MRPS31Q92665 395 aaKnown RBP11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 ANKRD36BP1Q96IX9 119 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 FGFBP2Q9BYJ0 223 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 MTMR12Q9C0I1 747 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 LRRC27Q9C0I9 530 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 PDE11AQ9HCR9 933 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 GDAP2Q9NXN4 497 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 DLL3Q9NYJ7 618 aa11.9□□□□□ -0.5
CCDC88C-213ENST00000557455 ATG2BQ96BY7 2078 aa11.9□□□□□ -0.51
CCDC88C-213ENST00000557455 GREB1Q4ZG55 1949 aa11.9□□□□□ -0.51
CCDC88C-213ENST00000557455 SOBPA7XYQ1 873 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 CHURC1-FNTBB4DL54 471 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 K7ELQ4 463 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 KIAA0391O15091 583 aaKnown RBP11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 PAPSS2O95340 614 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 SDHBP21912 280 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 CYP2F1P24903 491 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 LHX1P48742 406 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 FNTBP49356 437 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 RPL10AP62906 217 aaKnown RBP11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 MYO1EQ12965 1108 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 CCINQ13939 588 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 SURF1Q15526 300 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 DDR2Q16832 855 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 SDHAF4Q5VUM1 108 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 LMBRD2Q68DH5 695 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 TXNDC8Q6A555 127 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 SCARA3Q6AZY7 606 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 Q6ZS52 159 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 ADGRF2Q8IZF7 708 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 TOP6BLQ8N6T0 577 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 LINC00301Q8NCQ3 95 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 STKLD1Q8NE28 680 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 CXorf38Q8TB03 319 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 SPATA18Q8TC71 538 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 USP13Q92995 863 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 FAM84AQ96KN4 292 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 TNMDQ9H2S6 317 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 KIF9Q9HAQ2 790 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 ABCB6Q9NP58 842 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 GKN1Q9NS71 199 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 TDP1Q9NUW8 608 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 INTS13Q9NVM9 706 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 UXTQ9UBK9 157 aaPredicted RBP11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 SIX4Q9UIU6 781 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 GTF3C4Q9UKN8 822 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 USP18Q9UMW8 372 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 CCL26Q9Y258 94 aa11.89□□□□□ -0.51
CCDC88C-213ENST00000557455 HELZP42694 1942 aaKnown RBP11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 ZNF233A6NK53 670 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 PRR5-ARHGAP8B1AHC4 643 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 K7ESF4 209 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 SPTLC2O15270 562 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 PPP6R2O75170 966 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 NOL4O94818 638 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 TNNC2P02585 160 aa11.88□□□□□ -0.51
CCDC88C-213ENST00000557455 PCSK1P29120 753 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms