RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 PCDHGC3Q9UN70 934 aa10.84□□□□□ -0.67
SRP54-208ENST00000555557 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.84□□□□□ -0.67
SRP54-208ENST00000555557 MRPL42Q9Y6G3 142 aaKnown RBP10.84□□□□□ -0.67
SRP54-208ENST00000555557 LTBP2Q14767 1821 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 COL4A6Q14031 1691 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 MYBPHLA2RUH7 354 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 M0QYV0 167 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 CLDN5O00501 218 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 ATMINO43313 823 aaPredicted RBP10.83□□□□□ -0.68
SRP54-208ENST00000555557 MED7O43513 233 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 BUB1O43683 1085 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 GJB5O95377 273 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 CYP11A1P05108 521 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 FAM163BP0C2L3 166 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 PTPN1P18031 435 aaKnown RBP10.83□□□□□ -0.68
SRP54-208ENST00000555557 ADORA2BP29275 332 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 PTPN14Q15678 1187 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 GOLGA7BQ2TAP0 167 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 MDH1BQ5I0G3 518 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 C10orf76Q5T2E6 689 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 FAM171A1Q5VUB5 890 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 OVOS1Q6IE37 1185 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 LLGL2Q6P1M3 1020 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 METTL23Q86XA0 190 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 ARHGEF26Q96DR7 871 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 TNIP3Q96KP6 325 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 SYT15Q9BQS2 421 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 ZBED2Q9BTP6 218 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 CRTAC1Q9NQ79 661 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 GTF3C4Q9UKN8 822 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 KIAA1257Q9ULG3 409 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 PCDHB8Q9UN66 801 aa10.83□□□□□ -0.68
SRP54-208ENST00000555557 RANBP2P49792 3224 aaKnown RBP10.83□□□□□ -0.68
SRP54-208ENST00000555557 FNDC1Q4ZHG4 1894 aaPredicted RBP10.83□□□□□ -0.68
SRP54-208ENST00000555557 LAMA3Q16787 3333 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 TULP2O00295 520 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 PJA2O43164 708 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 TRAPPC3O43617 180 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 KRT86O43790 486 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 NSFP46459 744 aaKnown RBP10.82□□□□□ -0.68
SRP54-208ENST00000555557 CENPCQ03188 943 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 YWHAHQ04917 246 aaPredicted RBP10.82□□□□□ -0.68
SRP54-208ENST00000555557 FUT10Q6P4F1 479 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 KCNT2Q6UVM3 1135 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 LCLAT1Q6UWP7 414 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 NYAP1Q6ZVC0 841 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 TTC30AQ86WT1 665 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 OR10T2Q8NGX3 314 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 SLC2A14Q8TDB8 520 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 HERVK_113Q902F9 699 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 C11orf70Q9BRQ4 267 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 LUC7LQ9NQ29 371 aaKnown RBP10.82□□□□□ -0.68
SRP54-208ENST00000555557 MYO1AQ9UBC5 1043 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 TJP2Q9UDY2 1190 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 DSEQ9UL01 958 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 SLC4A7Q9Y6M7 1214 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 ANKRD62A6NC57 917 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 GOLGA6L9A6NEM1 432 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 MOCS3O95396 460 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 OR4Q2P0C623 313 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 TMEM253P0C7T8 217 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 TYMPP19971 482 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 PAX3P23760 479 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 GPD2P43304 727 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 NAP1L1P55209 391 aaKnown RBP10.82□□□□□ -0.68
SRP54-208ENST00000555557 C9orf50Q5SZB4 431 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 TRIM72Q6ZMU5 477 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 MMS22LQ6ZRQ5 1243 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 PAQR9Q6ZVX9 377 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 LRRTM3Q86VH5 581 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 CMTR2Q8IYT2 770 aaKnown RBP10.82□□□□□ -0.68
SRP54-208ENST00000555557 MCOLN2Q8IZK6 566 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 TMEM35BQ8NCS4 154 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 CTNNBL1Q8WYA6 563 aaPredicted RBP10.82□□□□□ -0.68
SRP54-208ENST00000555557 SECISBP2LQ93073 1101 aaKnown RBP10.82□□□□□ -0.68
SRP54-208ENST00000555557 IGSF21Q96ID5 467 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 LHX5Q9H2C1 402 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 OSGEPQ9NPF4 335 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 TMLHEQ9NVH6 421 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 CDH9Q9ULB4 789 aa10.82□□□□□ -0.68
SRP54-208ENST00000555557 PIK3R2O00459 728 aa10.81□□□□□ -0.68
SRP54-208ENST00000555557 SF3B1O75533 1304 aaKnown RBP eCLIP10.81□□□□□ -0.688e-10■■■■■ 32.7
SRP54-208ENST00000555557 LSM8O95777 96 aaKnown RBP10.81□□□□□ -0.68
SRP54-208ENST00000555557 TNNT1P13805 278 aa10.81□□□□□ -0.68
SRP54-208ENST00000555557 ATP2A2P16615 1042 aaKnown RBP10.81□□□□□ -0.68
SRP54-208ENST00000555557 PCSK1P29120 753 aa10.81□□□□□ -0.68
SRP54-208ENST00000555557 CDH5P33151 784 aaPredicted RBP10.81□□□□□ -0.68
SRP54-208ENST00000555557 RGS7P49802 495 aa10.81□□□□□ -0.68
SRP54-208ENST00000555557 RABGGTBP53611 331 aa10.81□□□□□ -0.68
SRP54-208ENST00000555557 GPC5P78333 572 aa10.81□□□□□ -0.68
SRP54-208ENST00000555557 HTRA4P83105 476 aaPredicted RBP10.81□□□□□ -0.68
SRP54-208ENST00000555557 ZNF569Q5MCW4 686 aa10.81□□□□□ -0.68
SRP54-208ENST00000555557 RTP2Q5QGT7 225 aa10.81□□□□□ -0.68
SRP54-208ENST00000555557 VARS2Q5ST30 1063 aaKnown RBP10.81□□□□□ -0.68
SRP54-208ENST00000555557 ARHGAP17Q68EM7 881 aa10.81□□□□□ -0.68
SRP54-208ENST00000555557 SMYD5Q6GMV2 418 aa10.81□□□□□ -0.68
SRP54-208ENST00000555557 ZNF662Q6ZS27 426 aa10.81□□□□□ -0.68
SRP54-208ENST00000555557 MON1BQ7L1V2 547 aa10.81□□□□□ -0.68
SRP54-208ENST00000555557 HERC6Q8IVU3 1022 aa10.81□□□□□ -0.68
SRP54-208ENST00000555557 FUKQ8N0W3 1084 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms