RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 ANKLE1Q8NAG6 615 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.91□□□□□ -0.344e-7■■□□□ 12.9
SHMT2-207ENST00000553837 C1orf54Q8WWF1 131 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 FAM136AQ96C01 138 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 STOML1Q9UBI4 398 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 SNCAIPQ9Y6H5 919 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 SOWAHBA6NEL2 793 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 NVLO15381 856 aaKnown RBP12.91□□□□□ -0.34
SHMT2-207ENST00000553837 CYP1A1P04798 512 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-207ENST00000553837 SKIP12755 728 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 PIK3CAP42336 1068 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 YARSP54577 528 aaKnown RBP12.91□□□□□ -0.34
SHMT2-207ENST00000553837 R3HDM1Q15032 1099 aaKnown RBP12.91□□□□□ -0.34
SHMT2-207ENST00000553837 NOL9Q5SY16 702 aaKnown RBP12.91□□□□□ -0.34
SHMT2-207ENST00000553837 RNF220Q5VTB9 566 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 PPP1R21Q6ZMI0 780 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 ENOSF1Q7L5Y1 443 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 USP37Q86T82 979 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 SESTD1Q86VW0 696 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 PASD1Q8IV76 773 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 ANKRD35Q8N283 1001 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 LRRC37BQ96QE4 947 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 FNBP1Q96RU3 617 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 SLX1AQ9BQ83 275 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 MAF1Q9H063 256 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 MLXIPLQ9NP71 852 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 RBAKQ9NYW8 714 aaPredicted RBP12.91□□□□□ -0.34
SHMT2-207ENST00000553837 GPRC5DQ9NZD1 345 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 ANKFY1Q9P2R3 1169 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 HAO1Q9UJM8 370 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 LRCH1Q9Y2L9 728 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 USH1CQ9Y6N9 552 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 ADGRA2Q96PE1 1338 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 CNTNAP2Q9UHC6 1331 aa12.91□□□□□ -0.34
SHMT2-207ENST00000553837 A0A0B4J269 797 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 K7ERI5 159 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 MAP3K13O43283 966 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 DCTN3O75935 186 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 PIGRP01833 764 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 CREB1P16220 341 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 GM2AP17900 193 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 MAPK4P31152 587 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 NAMPTP43490 491 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 CALCOCO2Q13137 446 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 VGLL4Q14135 290 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 TARBP2Q15633 366 aaKnown RBP12.9□□□□□ -0.34
SHMT2-207ENST00000553837 ZNF568Q3ZCX4 644 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 SH3D19Q5HYK7 790 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 RINLQ6ZS11 566 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 MON1BQ7L1V2 547 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 CCDC25Q86WR0 208 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 NLGN2Q8NFZ4 835 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 DEPTORQ8TB45 409 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 ATG4AQ8WYN0 398 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 ZNF333Q96JL9 665 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 TBC1D10AQ9BXI6 508 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 NIFKQ9BYG3 293 aaKnown RBP12.9□□□□□ -0.34
SHMT2-207ENST00000553837 MMADHCQ9H3L0 296 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-207ENST00000553837 STARD13Q9Y3M8 1113 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 NUB1Q9Y5A7 615 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 PCDHB2Q9Y5E7 798 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 PASKQ96RG2 1323 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 FSCN2O14926 492 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 CREB3O43889 395 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 FARP2O94887 1054 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-207ENST00000553837 MYBL1P10243 752 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 TAC1P20366 129 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 VHLP40337 213 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 TNFSF9P41273 254 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 IL9RQ01113 521 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 CENPCQ03188 943 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 CUL2Q13617 745 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 CAPSQ13938 189 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 LBX2Q6XYB7 198 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 ANKS1BQ7Z6G8 1248 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 CCDC105Q8IYK2 499 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 C12orf50Q8NA57 414 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-207ENST00000553837 ERP27Q96DN0 273 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 IFT43Q96FT9 208 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 MSTO1Q9BUK6 570 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 FAM192AQ9GZU8 254 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 KIAA1586Q9HCI6 787 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 CHST7Q9NS84 486 aa12.9□□□□□ -0.34
SHMT2-207ENST00000553837 H0YCG3 227 aa12.89□□□□□ -0.35
SHMT2-207ENST00000553837 GH1P01241 217 aa12.89□□□□□ -0.35
SHMT2-207ENST00000553837 HARSP12081 509 aaKnown RBP12.89□□□□□ -0.35
SHMT2-207ENST00000553837 TARSP26639 723 aaKnown RBP12.89□□□□□ -0.35
SHMT2-207ENST00000553837 MPP2Q14168 576 aa12.89□□□□□ -0.35
SHMT2-207ENST00000553837 WDR44Q5JSH3 913 aa12.89□□□□□ -0.35
SHMT2-207ENST00000553837 TMEM270Q6UE05 265 aa12.89□□□□□ -0.35
SHMT2-207ENST00000553837 ARMCX6Q7L4S7 300 aa12.89□□□□□ -0.35
SHMT2-207ENST00000553837 EEPD1Q7L9B9 569 aa12.89□□□□□ -0.35
SHMT2-207ENST00000553837 DNERQ8NFT8 737 aa12.89□□□□□ -0.35
SHMT2-207ENST00000553837 LRRC8CQ8TDW0 803 aa12.89□□□□□ -0.35
SHMT2-207ENST00000553837 KCNN1Q92952 543 aa12.89□□□□□ -0.35
SHMT2-207ENST00000553837 DDX27Q96GQ7 796 aaKnown RBP12.89□□□□□ -0.35
SHMT2-207ENST00000553837 SGIP1Q9BQI5 828 aa12.89□□□□□ -0.35
SHMT2-207ENST00000553837 CDC42EP4Q9H3Q1 356 aaKnown RBP12.89□□□□□ -0.35
SHMT2-207ENST00000553837 LRRC19Q9H756 370 aa12.89□□□□□ -0.35
SHMT2-207ENST00000553837 RMI1Q9H9A7 625 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms