RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 A8MUI8 341 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 HIP1RO75146 1068 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 LINC00271P0C7V0 271 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 HOXA11P31270 313 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-216ENST00000552909 GBP1P32455 592 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 PCK1P35558 622 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 PTENP60484 403 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 COPS2P61201 443 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 FAM189BP81408 668 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 CDC42EP1Q00587 391 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 EHHADHQ08426 723 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 CUL3Q13618 768 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 GIT2Q14161 759 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 MXD4Q14582 209 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-216ENST00000552909 SGSM1Q2NKQ1 1148 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 LRRC23Q53EV4 343 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-216ENST00000552909 PPP1R15BQ5SWA1 713 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 ANO7Q6IWH7 933 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 RINT1Q6NUQ1 792 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 CNNM4Q6P4Q7 775 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 CATSPER4Q7RTX7 472 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 DDX42Q86XP3 938 aaKnown RBP eCLIP8.12□□□□□ -1.11
LIMA1-216ENST00000552909 DAW1Q8N136 415 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 KCNV2Q8TDN2 545 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 FBF1Q8TES7 1133 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 ATXN2LQ8WWM7 1075 aaKnown RBP8.12□□□□□ -1.11
LIMA1-216ENST00000552909 ZNF689Q96CS4 500 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-216ENST00000552909 DUSP9Q99956 384 aaKnown RBP8.12□□□□□ -1.11
LIMA1-216ENST00000552909 FAM207AQ9NSI2 230 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-216ENST00000552909 TBC1D7Q9P0N9 293 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 HCSTQ9UBK5 93 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 USP20Q9Y2K6 914 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 C2CD2Q9Y426 696 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 ASB3Q9Y575 518 aa8.12□□□□□ -1.11
LIMA1-216ENST00000552909 BRWD1Q9NSI6 2320 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 TTLL13PA6NNM8 815 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 MEIS3P2A8K0S8 358 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 SFI1A8K8P3 1242 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 CES2O00748 559 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 PPFIA2O75334 1257 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 FGFR1P11362 822 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 MMP13P45452 471 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 DHX9Q08211 1270 aaKnown RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 GALNTL6Q49A17 601 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 PAN2Q504Q3 1202 aaKnown RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 HERC4Q5GLZ8 1057 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 C1orf186Q6ZWK4 172 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 RRAGAQ7L523 313 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 CDR2LQ86X02 465 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 NPAS4Q8IUM7 802 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 CCDC65Q8IXS2 484 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 MCPH1Q8NEM0 835 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 SP7Q8TDD2 431 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 P2RX5Q93086 422 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 DTNBP1Q96EV8 351 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 BICD1Q96G01 975 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 KIFC3Q9BVG8 833 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 ARHGEF3Q9NR81 526 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 INTS9Q9NV88 658 aaKnown RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 LMCD1Q9NZU5 365 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 WDR35Q9P2L0 1181 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 PIN4Q9Y237 131 aaKnown RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 LRRC42Q9Y546 428 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 FNDC1Q4ZHG4 1894 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 A0A0U1RQF3 1178 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 SSU72P8A0A1W2PR75 194 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 LRRIQ4A6NIV6 560 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 E7ENQ6 273 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 INO80B-WBP1J3KQ70 363 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 B4GALT5O43286 388 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 EDN1P05305 212 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 SETSIPP0DME0 302 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 ATF7P17544 494 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 CCNE1P24864 410 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 FLT3P36888 993 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 MBTD1Q05BQ5 628 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 BNIP1Q12981 228 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 COASYQ13057 564 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 MAPK7Q13164 816 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 DYNC1I2Q13409 638 aaKnown RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 NAB2Q15742 525 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 AMHR2Q16671 573 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 ASTE1Q2TB18 679 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 TDRD12Q587J7 1177 aaKnown RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 CMPK2Q5EBM0 449 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 SPDYCQ5MJ68 293 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 ODR4Q5SWX8 454 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 NUGGCQ68CJ6 796 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 APBB1IPQ7Z5R6 666 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 SDCCAG8Q86SQ7 713 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 KIF2BQ8N4N8 673 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 RNF169Q8NCN4 708 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 EEF2KMTQ96G04 330 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 CPB2Q96IY4 423 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 RBM41Q96IZ5 413 aaKnown RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 PBKQ96KB5 322 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 PRMT1Q99873 361 aaKnown RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 REEP2Q9BRK0 252 aa8.11□□□□□ -1.11
LIMA1-216ENST00000552909 INO80BQ9C086 356 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-216ENST00000552909 CCDC134Q9H6E4 229 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms