RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 TGS1Q96RS0 853 aaKnown RBP10.19□□□□□ -0.78
LIMA1-211ENST00000552338 CHP1Q99653 195 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 BAG1Q99933 345 aaPredicted RBP10.19□□□□□ -0.78
LIMA1-211ENST00000552338 AGPAT1Q99943 283 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 ZSWIM1Q9BR11 485 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 SNX25Q9H3E2 840 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 HAUS4Q9H6D7 363 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 CYLDQ9NQC7 956 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.19□□□□□ -0.78
LIMA1-211ENST00000552338 KCND1Q9NSA2 647 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 HMGXB4Q9UGU5 601 aa10.19□□□□□ -0.78
LIMA1-211ENST00000552338 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.19□□□□□ -0.78
LIMA1-211ENST00000552338 ZNF638Q14966 1978 aaKnown RBP10.18□□□□□ -0.78
LIMA1-211ENST00000552338 TMEM265A0A087WTH1 108 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 GRXCR1A8MXD5 290 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 EIF3CLB5ME19 914 aaKnown RBP10.18□□□□□ -0.78
LIMA1-211ENST00000552338 ABLIM3O94929 683 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 ARHGEF15O94989 841 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 PAPLNO95428 1278 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 LSM8O95777 96 aaKnown RBP10.18□□□□□ -0.78
LIMA1-211ENST00000552338 PNMA6AP0CW24 399 aaPredicted RBP10.18□□□□□ -0.78
LIMA1-211ENST00000552338 CD58P19256 250 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 PBX3P40426 434 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 PDE6CP51160 858 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 RABGGTBP53611 331 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 GSCP56915 257 aaPredicted RBP10.18□□□□□ -0.78
LIMA1-211ENST00000552338 CREMQ03060 361 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 GOLGA8FQ08AF8 430 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 GOLGA8DPQ0D2H9 430 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 GPR17Q13304 367 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 CFAP221Q4G0U5 840 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 SGO2Q562F6 1265 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 RTP2Q5QGT7 225 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 SPOUT1Q5T280 376 aaKnown RBP10.18□□□□□ -0.78
LIMA1-211ENST00000552338 C10orf76Q5T2E6 689 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 ZNF280DQ6N043 979 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 SCARA5Q6ZMJ2 495 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 PAQR9Q6ZVX9 377 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 RTL10Q7L3V2 364 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 NOP9Q86U38 636 aaKnown RBP10.18□□□□□ -0.78
LIMA1-211ENST00000552338 ANKRD52Q8NB46 1076 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 OR10T2Q8NGX3 314 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 HASPINQ8TF76 798 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 TFAP2BQ92481 460 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 VCPIP1Q96JH7 1222 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 EIF3CQ99613 913 aaKnown RBP10.18□□□□□ -0.78
LIMA1-211ENST00000552338 SYT15Q9BQS2 421 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 C11orf84Q9BUA3 381 aaPredicted RBP10.18□□□□□ -0.78
LIMA1-211ENST00000552338 LMAN2LQ9H0V9 348 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 ISCUQ9H1K1 167 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 NHEJ1Q9H9Q4 299 aaPredicted RBP10.18□□□□□ -0.78
LIMA1-211ENST00000552338 CSNK1G1Q9HCP0 422 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 ABCB6Q9NP58 842 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 PNPLA8Q9NP80 782 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 CRTAC1Q9NQ79 661 aa10.18□□□□□ -0.78
LIMA1-211ENST00000552338 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.18□□□□□ -0.781e-7■■■■■ 115.4
LIMA1-211ENST00000552338 PUF60Q9UHX1 559 aaKnown RBP10.18□□□□□ -0.78
LIMA1-211ENST00000552338 YBX2Q9Y2T7 364 aaKnown RBP10.18□□□□□ -0.78
LIMA1-211ENST00000552338 I3L4J1 428 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 TULP1O00294 542 aaPredicted RBP10.17□□□□□ -0.78
LIMA1-211ENST00000552338 DDX3XO00571 662 aaKnown RBP eCLIP10.17□□□□□ -0.78
LIMA1-211ENST00000552338 CA3P07451 260 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 SETSIPP0DME0 302 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 KRT5P13647 590 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 GPD2P43304 727 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 MAGEA11P43364 429 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 GLUD2P49448 558 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 CENPCQ03188 943 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 CAMK1Q14012 370 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 RAB33AQ14088 237 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 NFE2Q16621 373 aaPredicted RBP10.17□□□□□ -0.78
LIMA1-211ENST00000552338 PPP1R26Q5T8A7 1209 aaPredicted RBP10.17□□□□□ -0.78
LIMA1-211ENST00000552338 TPGS2Q68CL5 300 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 ACOT1Q86TX2 421 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 LRRTM3Q86VH5 581 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 VPS36Q86VN1 386 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 DCP1BQ8IZD4 617 aaKnown RBP10.17□□□□□ -0.78
LIMA1-211ENST00000552338 FUKQ8N0W3 1084 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 VPS52Q8N1B4 723 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 SCML4Q8N228 414 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 WDTC1Q8N5D0 677 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 SLC35F5Q8WV83 523 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 CYFIP2Q96F07 1278 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 CCDC42Q96M95 316 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 HEXIM2Q96MH2 286 aaKnown RBP10.17□□□□□ -0.78
LIMA1-211ENST00000552338 CLSTN3Q9BQT9 956 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 KCNF1Q9H3M0 494 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 DPEP3Q9H4B8 488 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 NGRNQ9NPE2 291 aaKnown RBP10.17□□□□□ -0.78
LIMA1-211ENST00000552338 MSRAQ9UJ68 235 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 NAGPAQ9UK23 515 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 INTUQ9ULD6 942 aa10.17□□□□□ -0.78
LIMA1-211ENST00000552338 TIMM13Q9Y5L4 95 aaPredicted RBP10.17□□□□□ -0.78
LIMA1-211ENST00000552338 EPN1Q9Y6I3 576 aaPredicted RBP10.17□□□□□ -0.78
LIMA1-211ENST00000552338 COL4A4P53420 1690 aaPredicted RBP10.16□□□□□ -0.78
LIMA1-211ENST00000552338 A0A087X0T9 212 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 MYBPHLA2RUH7 354 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 NRDCO43847 1150 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 NDUFA10O95299 355 aa10.16□□□□□ -0.78
LIMA1-211ENST00000552338 MMEP08473 750 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms