RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 ADAM7Q9H2U9 754 aa17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 PIDD1Q9HB75 910 aa17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 ABI2Q9NYB9 513 aaPredicted RBP17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 SLC27A5Q9Y2P5 690 aa17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 PCDHB5Q9Y5E4 795 aa17.32■□□□□ 0.36
CHMP1A-209ENST00000550872 GRXCR2A6NFK2 248 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 MBTPS2O43462 519 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 CAVIN2O95810 425 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 LRG1P02750 347 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 ZNF18P17022 549 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 PTPN1P18031 435 aaKnown RBP17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 NDST1P52848 882 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 CUL2Q13617 745 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 IQCB1Q15051 598 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 MAPRE1Q15691 268 aaKnown RBP17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 CCDC142Q17RM4 750 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 PUS10Q3MIT2 529 aaKnown RBP17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 MDH1BQ5I0G3 518 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 ATAT1Q5SQI0 421 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 PTCRAQ6ISU1 281 aaPredicted RBP17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 FAM171BQ6P995 826 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 GPR149Q86SP6 731 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 UNC93AQ86WB7 457 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 SPATA2LQ8IUW3 424 aaPredicted RBP17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 SPPL2BQ8TCT7 592 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 C2orf15Q8WU43 125 aaKnown RBP17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 SMG7Q92540 1137 aaKnown RBP17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 PKMYT1Q99640 499 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 PRKD2Q9BZL6 878 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 DPEP3Q9H4B8 488 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 CBX8Q9HC52 389 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 CRTAC1Q9NQ79 661 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 GCNT4Q9P109 453 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 USP15Q9Y4E8 981 aaPredicted RBP17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 INSL5Q9Y5Q6 135 aa17.31■□□□□ 0.36
CHMP1A-209ENST00000550872 GTPBP10A4D1E9 387 aaKnown RBP17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 CCL16O15467 120 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 XYLBO75191 536 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 TBXAS1P24557 533 aaPredicted RBP17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 HOXA9P31269 272 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 TUFMP49411 452 aaKnown RBP17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 KCNQ1P51787 676 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 YWHAEP62258 255 aaKnown RBP17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 INCA1Q0VD86 236 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 ORC1Q13415 861 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 EXOC3L4Q17RC7 722 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 C4orf50Q6ZRC1 276 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 ACOT1Q86TX2 421 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 PPM1KQ8N3J5 372 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 TTC39CQ8N584 583 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 TTC9BQ8N6N2 239 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 B3GALNT2Q8NCR0 500 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 FEZF2Q8TBJ5 459 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 MYCBPAPQ8TBZ2 947 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 ZNF707Q96C28 371 aaPredicted RBP17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 TNIP3Q96KP6 325 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 RIPOR3Q96MK2 946 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 SEPT5Q99719 369 aaPredicted RBP17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 ARID3AQ99856 593 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 LPIN3Q9BQK8 851 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 HSD3B7Q9H2F3 369 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 CRISPLD1Q9H336 500 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 CISHQ9NSE2 258 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 HSFX1Q9UBD0 423 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 HMGXB4Q9UGU5 601 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 LIMA1Q9UHB6 759 aaKnown RBP17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 CDH22Q9UJ99 828 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 FAM50BQ9Y247 325 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 YIPF1Q9Y548 306 aa17.3■□□□□ 0.36
CHMP1A-209ENST00000550872 CILPO75339 1184 aa17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 HAPLN1P10915 354 aaPredicted RBP17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 TRIM21P19474 475 aaKnown RBP17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 SLC9A1P19634 815 aa17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 MTHFRP42898 656 aa17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 ALDH1A3P47895 512 aa17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 COPB1P53618 953 aaKnown RBP17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 CYP27A1Q02318 531 aa17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 TWF1Q12792 350 aa17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 MGAT5BQ3V5L5 792 aa17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 LRSAM1Q6UWE0 723 aa17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 CYP26C1Q6V0L0 522 aa17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 RRAGAQ7L523 313 aa17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 ARHGEF19Q8IW93 802 aa17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 CRYBG2Q8N1P7 616 aa17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 MYLPFQ96A32 169 aa17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 NT5C1AQ9BXI3 368 aa17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 DNAI2Q9GZS0 605 aa17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 TSPY26PQ9H489 355 aa17.29■□□□□ 0.36
CHMP1A-209ENST00000550872 SOAT2O75908 522 aa17.28■□□□□ 0.36
CHMP1A-209ENST00000550872 ATP1A3P13637 1013 aa17.28■□□□□ 0.36
CHMP1A-209ENST00000550872 IL9P15248 144 aa17.28■□□□□ 0.36
CHMP1A-209ENST00000550872 CYP2F1P24903 491 aa17.28■□□□□ 0.36
CHMP1A-209ENST00000550872 PON1P27169 355 aa17.28■□□□□ 0.36
CHMP1A-209ENST00000550872 TPM4P67936 248 aa17.28■□□□□ 0.36
CHMP1A-209ENST00000550872 PLD1Q13393 1074 aa17.28■□□□□ 0.36
CHMP1A-209ENST00000550872 ZNF394Q53GI3 561 aa17.28■□□□□ 0.36
CHMP1A-209ENST00000550872 FKBP15Q5T1M5 1219 aa17.28■□□□□ 0.36
CHMP1A-209ENST00000550872 PHLDB3Q6NSJ2 640 aa17.28■□□□□ 0.36
CHMP1A-209ENST00000550872 TRIM65Q6PJ69 517 aa17.28■□□□□ 0.36
CHMP1A-209ENST00000550872 LUZP1Q86V48 1076 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms