RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	ASNSD1	Q9NWL6	643 aa		13.71	□□□□□ -0.21
CPSF7-223	ENST00000544669	NOP56	O00567	594 aa	Known RBP	13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	FAM189A1	O60320	539 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	CAPN15	O75808	1086 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	TOMM70	O94826	608 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	ASMTL	O95671	621 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	CST3	P01034	146 aa	Predicted RBP	13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	PECAM1	P16284	738 aa	Predicted RBP	13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	TAC1	P20366	129 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	PROZ	P22891	400 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	CCND1	P24385	295 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	PCK1	P35558	622 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	YARS	P54577	528 aa	Known RBP	13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	ATP11A	P98196	1134 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	LAMTOR4	Q0VGL1	99 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	HHAT	Q5VTY9	493 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	NT5DC4	Q86YG4	428 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	MAP7D3	Q8IWC1	876 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	DNAI2	Q9GZS0	605 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	SYNC	Q9H7C4	482 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	RPF1	Q9H9Y2	349 aa	Known RBP	13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	TBK1	Q9UHD2	729 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	RPL26L1	Q9UNX3	145 aa	Known RBP	13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	TNFSF13B	Q9Y275	285 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	SNCAIP	Q9Y6H5	919 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	GJA3	Q9Y6H8	435 aa		13.71	□□□□□ -0.22
CPSF7-223	ENST00000544669	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669		F8VP50	259 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	HBP1	O60381	514 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	UBOX5	O94941	541 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	HMGCR	P04035	888 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	KRT10	P13645	584 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	CCNB1	P14635	433 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	TFAM	Q00059	246 aa	Known RBP	13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	MYO1E	Q12965	1108 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	PDIA2	Q13087	525 aa	Known RBP	13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	LLGL1	Q15334	1064 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	FAM133B	Q5BKY9	247 aa	Known RBP	13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	EFHC2	Q5JST6	749 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	ATF7IP2	Q5U623	682 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	ANGEL2	Q5VTE6	544 aa	Known RBP	13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	VSIG1	Q86XK7	387 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	ZBED8	Q8IZ13	594 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	RNF149	Q8NC42	400 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	DENND1A	Q8TEH3	1009 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	PRCC	Q92733	491 aa	Predicted RBP	13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	MYCBP	Q99417	103 aa	Predicted RBP	13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	MAK16	Q9BXY0	300 aa	Known RBP	13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	MTMR12	Q9C0I1	747 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	FZD8	Q9H461	694 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	SMARCAD1	Q9H4L7	1026 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	ASB7	Q9H672	318 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	VRTN	Q9H8Y1	702 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	NOD2	Q9HC29	1040 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	ARHGEF3	Q9NR81	526 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	PRMT7	Q9NVM4	692 aa	Predicted RBP	13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	SI	P14410	1827 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	PARP14	Q460N5	1801 aa		13.7	□□□□□ -0.22
CPSF7-223	ENST00000544669	CFAP69	A5D8W1	941 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	VGLL3	A8MV65	326 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	APOC4-APOC2	K7ER74	178 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	NFKBIE	O00221	500 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	MCF2L	O15068	1137 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	WFS1	O76024	890 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	APOC2	P02655	101 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	CFH	P08603	1231 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	HARS	P12081	509 aa	Known RBP	13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	KDELR1	P24390	212 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	BRD2	P25440	801 aa	Known RBP	13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	GABRB2	P47870	512 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	WNT7B	P56706	349 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	TMEM132A	Q24JP5	1023 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	PARP6	Q2NL67	630 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	C2CD6	Q53TS8	623 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	LGSN	Q5TDP6	509 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	PALM2	Q8IXS6	379 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	DHX37	Q8IY37	1157 aa	Known RBP	13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	AGGF1	Q8N302	714 aa	eCLIP	13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	CFAP61	Q8NHU2	1237 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	GDAP1	Q8TB36	358 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	INPP5D	Q92835	1189 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	PCYT2	Q99447	389 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	BCO2	Q9BYV7	579 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	ABCF3	Q9NUQ8	709 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	GEMIN8	Q9NWZ8	242 aa	Known RBP	13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	CTNNAL1	Q9UBT7	734 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	IKBKG	Q9Y6K9	419 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	IQANK1	A0A1B0GTG1	560 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669		E7ESA3	106 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	POC1B-GALNT4	F8VUJ3	575 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	PI4K2B	G5E9Z4	385 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	EGFR	P00533	1210 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	CALCA	P01258	141 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	TROVE2	P10155	538 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	VDR	P11473	427 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	ALAD	P13716	330 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	CD19	P15391	556 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	CA4	P22748	312 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	ASPA	P45381	313 aa		13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms