RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 CRKP46108 304 aa14.88□□□□□ -0.03
LIMS1-215ENST00000544547 NT5C2P49902 561 aa14.88□□□□□ -0.03
LIMS1-215ENST00000544547 EIF3EP60228 445 aaKnown RBP14.88□□□□□ -0.03
LIMS1-215ENST00000544547 SLC25A3Q00325 362 aa14.88□□□□□ -0.03
LIMS1-215ENST00000544547 DEFB107AQ8IZN7 70 aa14.88□□□□□ -0.03
LIMS1-215ENST00000544547 CYP4X1Q8N118 509 aa14.88□□□□□ -0.03
LIMS1-215ENST00000544547 ECSITQ9BQ95 431 aa14.88□□□□□ -0.03
LIMS1-215ENST00000544547 DCLK3Q9C098 648 aa14.88□□□□□ -0.03
LIMS1-215ENST00000544547 DRC3Q9H069 523 aa14.88□□□□□ -0.03
LIMS1-215ENST00000544547 C10orf88Q9H8K7 445 aa14.88□□□□□ -0.03
LIMS1-215ENST00000544547 A8MXQ7 604 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 ABLIM1O14639 778 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 MAP3K6O95382 1288 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 GYS1P13807 737 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 PPP4CP60510 307 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 CDK16Q00536 496 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 ATP1A4Q13733 1029 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 FLOT2Q14254 428 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 PDK4Q16654 411 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 LRRC8BQ6P9F7 803 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 PALB2Q86YC2 1186 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 CCNYQ8ND76 341 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 RFWD2Q8NHY2 731 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 FAM149B1Q96BN6 582 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 ZC3H7BQ9UGR2 993 aaKnown RBP14.87□□□□□ -0.03
LIMS1-215ENST00000544547 HERC5Q9UII4 1024 aaKnown RBP14.87□□□□□ -0.03
LIMS1-215ENST00000544547 A0A1B0GVG6 124 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 CST8O60676 142 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 ETS1P14921 441 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 RAG1P15918 1043 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 TYK2P29597 1187 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 CENPCQ03188 943 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 BMPR2Q13873 1038 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 SPOUT1Q5T280 376 aaKnown RBP14.87□□□□□ -0.03
LIMS1-215ENST00000544547 ZCCHC23Q6ZST2 131 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 RTFDC1Q9BY42 306 aaPredicted RBP14.87□□□□□ -0.03
LIMS1-215ENST00000544547 PAIP1Q9H074 479 aaKnown RBP14.87□□□□□ -0.03
LIMS1-215ENST00000544547 IP6K2Q9UHH9 426 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 ESYT2A0FGR8 921 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 DENND3A2RUS2 1198 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 PIK3CDO00329 1044 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 STRNO43815 780 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 FKBP6O75344 327 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 CASP2P42575 452 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 TFAMQ00059 246 aaKnown RBP14.87□□□□□ -0.03
LIMS1-215ENST00000544547 DCTN2Q13561 401 aaKnown RBP14.87□□□□□ -0.03
LIMS1-215ENST00000544547 LPCAT4Q643R3 524 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 CHADLQ6NUI6 762 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 DNAAF3Q8N9W5 541 aa14.87□□□□□ -0.03
LIMS1-215ENST00000544547 ZBTB39O15060 712 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 GJB6O95452 261 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 CIITAP33076 1130 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 PRELPP51888 382 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 OSTNP61366 133 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 RPS6P62753 249 aaKnown RBP14.86□□□□□ -0.03
LIMS1-215ENST00000544547 IL1RL1Q01638 556 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 PPP1R18Q6NYC8 613 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 CCNYL1Q8N7R7 359 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 FAM71DQ8N9W8 422 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 ZNF384Q8TF68 577 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 MCEEQ96PE7 176 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 FOXP3Q9BZS1 431 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 COA1Q9GZY4 146 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 UPF3AQ9H1J1 476 aaKnown RBP14.86□□□□□ -0.03
LIMS1-215ENST00000544547 SEL1LQ9UBV2 794 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 NUB1Q9Y5A7 615 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 TNS2Q63HR2 1409 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 A6NJR5 290 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 IRF6O14896 467 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 SRGAP2CP0DJJ0 459 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 SRGAP2BP0DMP2 458 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 EIF2AK2P19525 551 aaKnown RBP14.86□□□□□ -0.03
LIMS1-215ENST00000544547 NUDT2P50583 147 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 OTUD4Q01804 1114 aaKnown RBP14.86□□□□□ -0.03
LIMS1-215ENST00000544547 PPATQ06203 517 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 SLC1A5Q15758 541 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 ACSBG2Q5FVE4 666 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 JADE1Q6IE81 842 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 ARHGEF19Q8IW93 802 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 CBWD1Q9BRT8 395 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 AURKCQ9UQB9 309 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 PCDHA3Q9Y5H8 950 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 DDX3YO15523 660 aaKnown RBP14.86□□□□□ -0.03
LIMS1-215ENST00000544547 TBX10O75333 385 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 PROCP04070 461 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 SNRPAP09012 282 aaKnown RBP14.86□□□□□ -0.03
LIMS1-215ENST00000544547 CYP11B1P15538 503 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 RGS2P41220 211 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 HIRAP54198 1017 aaPredicted RBP14.86□□□□□ -0.03
LIMS1-215ENST00000544547 RTP1P59025 263 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 ECM1Q16610 540 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 VSTM1Q6UX27 236 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 CYP2W1Q8TAV3 490 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 LENG1Q96BZ8 264 aaPredicted RBP14.86□□□□□ -0.03
LIMS1-215ENST00000544547 CADM1Q9BY67 442 aaKnown RBP14.86□□□□□ -0.03
LIMS1-215ENST00000544547 KLC2Q9H0B6 622 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 LRRC4CQ9HCJ2 640 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 KLHL2O95198 593 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 VCAM1P19320 739 aa14.86□□□□□ -0.03
LIMS1-215ENST00000544547 MAP4P27816 1152 aaKnown RBP14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms