RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 HEXIM1O94992 359 aaKnown RBP9.3□□□□□ -0.92
VPS13D-212ENST00000543766 LTKP29376 864 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 TKTL1P51854 596 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 ATXN1P54253 815 aaKnown RBP9.3□□□□□ -0.92
VPS13D-212ENST00000543766 STK4Q13043 487 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 EFTUD2Q15029 972 aaKnown RBP eCLIP9.3□□□□□ -0.92
VPS13D-212ENST00000543766 NECTIN1Q15223 517 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 FBXO43Q4G163 708 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 PRPF38BQ5VTL8 546 aaKnown RBP9.3□□□□□ -0.92
VPS13D-212ENST00000543766 TMC7Q7Z402 723 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 MTMR14Q8NCE2 650 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 CA5BP1Q8WTZ4 195 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 HSPBAP1Q96EW2 488 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 FRMD8P1Q9BZ68 369 aaPredicted RBP9.3□□□□□ -0.92
VPS13D-212ENST00000543766 SCAF8Q9UPN6 1271 aaKnown RBP9.3□□□□□ -0.92
VPS13D-212ENST00000543766 TRAF3IP3Q9Y228 551 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 DNAJC16Q9Y2G8 782 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 MYO3BQ8WXR4 1341 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 TAF4O00268 1085 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 IRS4O14654 1257 aaPredicted RBP9.3□□□□□ -0.92
VPS13D-212ENST00000543766 MCF2LO15068 1137 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 SMAD9O15198 467 aaKnown RBP9.3□□□□□ -0.92
VPS13D-212ENST00000543766 DTNBO60941 627 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 ABCB1P08183 1280 aaPredicted RBP9.3□□□□□ -0.92
VPS13D-212ENST00000543766 ITGAXP20702 1163 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 HOXC12P31275 282 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 SOX6P35712 828 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 POU3F4P49335 361 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 CCDC102BQ68D86 513 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 TTC23LQ6PF05 361 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 LILRB4Q8NHJ6 448 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 ZNF668Q96K58 619 aaPredicted RBP9.3□□□□□ -0.92
VPS13D-212ENST00000543766 CAAP1Q9H8G2 361 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 CHMP1AQ9HD42 196 aaPredicted RBP9.3□□□□□ -0.92
VPS13D-212ENST00000543766 INTS13Q9NVM9 706 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 SLAIN2Q9P270 581 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 TRHDEQ9UKU6 1024 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 PLCL2Q9UPR0 1127 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 PRR36Q9H6K5 1346 aa9.3□□□□□ -0.92
VPS13D-212ENST00000543766 PHRF1Q9P1Y6 1649 aaKnown RBP9.3□□□□□ -0.92
VPS13D-212ENST00000543766 E2F8A0AVK6 867 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 DCDC2CA8MYV0 355 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 SOCS7O14512 581 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 BIRC5O15392 142 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 USP1O94782 785 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 COL6A2P12110 1019 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 GNG11P61952 73 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 EEF1A1P68104 462 aaKnown RBP9.29□□□□□ -0.92
VPS13D-212ENST00000543766 EEF1A2Q05639 463 aaKnown RBP9.29□□□□□ -0.92
VPS13D-212ENST00000543766 C17orf67Q0P5P2 114 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 EAPPQ56P03 285 aaPredicted RBP9.29□□□□□ -0.92
VPS13D-212ENST00000543766 EEF1A1P5Q5VTE0 462 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 DDX60Q8IY21 1712 aaKnown RBP9.29□□□□□ -0.92
VPS13D-212ENST00000543766 CADM3Q8N126 398 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 CPT1BQ92523 772 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 EFHD1Q9BUP0 239 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 SLC26A6Q9BXS9 759 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 SEMA3GQ9NS98 782 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 PNMA8BQ9ULN7 279 aaPredicted RBP9.29□□□□□ -0.92
VPS13D-212ENST00000543766 F8W8V4 182 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 GCOM1H8Y6P7 765 aaPredicted RBP9.29□□□□□ -0.92
VPS13D-212ENST00000543766 J3KRW8 73 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 STX10O60499 249 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 CLPTM1O96005 669 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 CSF2RAP15509 400 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 IL10P22301 178 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 SP100P23497 879 aaPredicted RBP9.29□□□□□ -0.92
VPS13D-212ENST00000543766 HOXD13P35453 343 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 PIK3CBP42338 1070 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 ZAP70P43403 619 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 CACNB3P54284 484 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 HAND2P61296 217 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 KCNJ2P63252 427 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 FANCCQ00597 558 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 RAPSNQ13702 412 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 COL9A3Q14050 684 aaPredicted RBP9.29□□□□□ -0.92
VPS13D-212ENST00000543766 MXD4Q14582 209 aaPredicted RBP9.29□□□□□ -0.92
VPS13D-212ENST00000543766 SSPNQ14714 243 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 NONOQ15233 471 aaKnown RBP eCLIP9.29□□□□□ -0.92
VPS13D-212ENST00000543766 DPCR1Q3MIW9 517 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 PDPK2PQ6A1A2 396 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 HMBOX1Q6NT76 420 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 UTS2BQ765I0 119 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 PHC2Q8IXK0 858 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 ZNF619Q8N2I2 560 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 NECAB1Q8N987 351 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 GANCQ8TET4 914 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 KRT35Q92764 455 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 DPF2Q92785 391 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 ZSCAN5AQ9BUG6 496 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 PAIP1Q9H074 479 aaKnown RBP9.29□□□□□ -0.92
VPS13D-212ENST00000543766 INTS2Q9H0H0 1204 aaKnown RBP9.29□□□□□ -0.92
VPS13D-212ENST00000543766 TSPYL4Q9UJ04 414 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 ZMIZ1Q9ULJ6 1067 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 ROBO1Q9Y6N7 1651 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 LOC102724428A0A0B4J2F2 783 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 IQANK1A0A1B0GTG1 560 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 TSPAN4O14817 238 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 NPR1P16066 1061 aa9.29□□□□□ -0.92
VPS13D-212ENST00000543766 IL13P35225 146 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms