RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 TXNDC8Q6A555 127 aa19.25■□□□□ 0.67
CLSTN3-214ENST00000542663 FIZ1Q96SL8 496 aa19.25■□□□□ 0.67
CLSTN3-214ENST00000542663 PYM1Q9BRP8 204 aaKnown RBP19.25■□□□□ 0.67
CLSTN3-214ENST00000542663 VPS45Q9NRW7 570 aa19.25■□□□□ 0.67
CLSTN3-214ENST00000542663 TDP1Q9NUW8 608 aa19.25■□□□□ 0.67
CLSTN3-214ENST00000542663 ABI2Q9NYB9 513 aaPredicted RBP19.25■□□□□ 0.67
CLSTN3-214ENST00000542663 PLXND1Q9Y4D7 1925 aa19.24■□□□□ 0.67
CLSTN3-214ENST00000542663 TISP43B9A030 160 aa19.24■□□□□ 0.67
CLSTN3-214ENST00000542663 ANKRD63C9JTQ0 380 aa19.24■□□□□ 0.67
CLSTN3-214ENST00000542663 GPR15P49685 360 aa19.24■□□□□ 0.67
CLSTN3-214ENST00000542663 ACOT2P49753 483 aa19.24■□□□□ 0.67
CLSTN3-214ENST00000542663 RNF43Q68DV7 783 aa19.24■□□□□ 0.67
CLSTN3-214ENST00000542663 METTL23Q86XA0 190 aa19.24■□□□□ 0.67
CLSTN3-214ENST00000542663 CDK5RAP3Q96JB5 506 aa19.24■□□□□ 0.67
CLSTN3-214ENST00000542663 ZSCAN31Q96LW9 406 aaPredicted RBP19.24■□□□□ 0.67
CLSTN3-214ENST00000542663 CCSER1Q9C0I3 900 aa19.24■□□□□ 0.67
CLSTN3-214ENST00000542663 KIF9Q9HAQ2 790 aa19.24■□□□□ 0.67
CLSTN3-214ENST00000542663 TMLHEQ9NVH6 421 aa19.24■□□□□ 0.67
CLSTN3-214ENST00000542663 MYOFQ9NZM1 2061 aa19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 DCLK1O15075 740 aa19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 TADA3O75528 432 aa19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 DRD1P21728 446 aa19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 DDX6P26196 483 aaKnown RBP eCLIP19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 GJA4P35212 333 aa19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 TAF6P49848 677 aa19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 SMARCB1Q12824 385 aa19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 BFSP1Q12934 665 aa19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 PSAPL1Q6NUJ1 521 aa19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 GPBP1Q86WP2 473 aa19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 THEM5Q8N1Q8 247 aa19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 MYCT1Q8N699 235 aa19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 RPLP0P6Q8NHW5 317 aa19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 ASB7Q9H672 318 aa19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 SH2B1Q9NRF2 756 aaPredicted RBP19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 DPP3Q9NY33 737 aa19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 C2CD2Q9Y426 696 aa19.23■□□□□ 0.67
CLSTN3-214ENST00000542663 ADAMTS9Q9P2N4 1935 aa19.22■□□□□ 0.67
CLSTN3-214ENST00000542663 TRAK2O60296 914 aa19.22■□□□□ 0.67
CLSTN3-214ENST00000542663 SCP2P22307 547 aa19.22■□□□□ 0.67
CLSTN3-214ENST00000542663 GTF2BQ00403 316 aa19.22■□□□□ 0.67
CLSTN3-214ENST00000542663 ZNF268Q14587 947 aaPredicted RBP19.22■□□□□ 0.67
CLSTN3-214ENST00000542663 RILPL1Q5EBL4 403 aa19.22■□□□□ 0.67
CLSTN3-214ENST00000542663 SYT13Q7L8C5 426 aa19.22■□□□□ 0.67
CLSTN3-214ENST00000542663 MON1AQ86VX9 555 aa19.22■□□□□ 0.67
CLSTN3-214ENST00000542663 EFCAB13Q8IY85 973 aa19.22■□□□□ 0.67
CLSTN3-214ENST00000542663 P2RY13Q9BPV8 354 aa19.22■□□□□ 0.67
CLSTN3-214ENST00000542663 EDEM2Q9BV94 578 aa19.22■□□□□ 0.67
CLSTN3-214ENST00000542663 PARVGQ9HBI0 331 aa19.22■□□□□ 0.67
CLSTN3-214ENST00000542663 BLOC1S4Q9NUP1 217 aa19.22■□□□□ 0.67
CLSTN3-214ENST00000542663 EBF1Q9UH73 591 aa19.22■□□□□ 0.67
CLSTN3-214ENST00000542663 PCDHB5Q9Y5E4 795 aa19.22■□□□□ 0.67
CLSTN3-214ENST00000542663 PI4KAP42356 2102 aa19.22■□□□□ 0.67
CLSTN3-214ENST00000542663 FAM208BQ5VWN6 2430 aa19.22■□□□□ 0.67
CLSTN3-214ENST00000542663 AKAP13Q12802 2813 aa19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 SOBPA7XYQ1 873 aa19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 GIPC1O14908 333 aa19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 FAM13AO94988 1023 aa19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 PROS1P07225 676 aa19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 AMPD2Q01433 879 aa19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 DHX8Q14562 1220 aaKnown RBP19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 FBXO43Q4G163 708 aa19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 SDHAF4Q5VUM1 108 aa19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 CC2D1AQ6P1N0 951 aaPredicted RBP19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 CRELD2Q6UXH1 353 aaPredicted RBP19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 SLC22A12Q96S37 553 aa19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 KIF2CQ99661 725 aa19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 PI4K2AQ9BTU6 479 aa19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 IKZF4Q9H2S9 585 aa19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 ECT2Q9H8V3 914 aa19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 MAGED2Q9UNF1 606 aaPredicted RBP19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 STYXL1Q9Y6J8 313 aa19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 ASCC3Q8N3C0 2202 aaKnown RBP19.21■□□□□ 0.67
CLSTN3-214ENST00000542663 LNP1A1A4G5 178 aa19.2■□□□□ 0.66
CLSTN3-214ENST00000542663 BCLAF3A2AJT9 711 aaKnown RBP19.2■□□□□ 0.66
CLSTN3-214ENST00000542663 C4orf47A7E2U8 309 aa19.2■□□□□ 0.66
CLSTN3-214ENST00000542663 KPNA7A9QM74 516 aa19.2■□□□□ 0.66
CLSTN3-214ENST00000542663 C1QTNF9BB2RNN3 333 aa19.2■□□□□ 0.66
CLSTN3-214ENST00000542663 C1QTNF9P0C862 333 aa19.2■□□□□ 0.66
CLSTN3-214ENST00000542663 CREB5Q02930 508 aa19.2■□□□□ 0.66
CLSTN3-214ENST00000542663 DMC1Q14565 340 aa19.2■□□□□ 0.66
CLSTN3-214ENST00000542663 MTF1Q14872 753 aa19.2■□□□□ 0.66
CLSTN3-214ENST00000542663 PDGFRLQ15198 375 aa19.2■□□□□ 0.66
CLSTN3-214ENST00000542663 ZNF77Q15935 545 aa19.2■□□□□ 0.66
CLSTN3-214ENST00000542663 ZC2HC1CQ53FD0 456 aaPredicted RBP19.2■□□□□ 0.66
CLSTN3-214ENST00000542663 ARL6IP4Q66PJ3 421 aaKnown RBP19.2■□□□□ 0.66
CLSTN3-214ENST00000542663 ADALQ6DHV7 355 aa19.2■□□□□ 0.66
CLSTN3-214ENST00000542663 DCP1BQ8IZD4 617 aaKnown RBP19.2■□□□□ 0.66
CLSTN3-214ENST00000542663 MRPS31Q92665 395 aaKnown RBP19.2■□□□□ 0.66
CLSTN3-214ENST00000542663 WASF3Q9UPY6 502 aa19.2■□□□□ 0.66
CLSTN3-214ENST00000542663 PRPF40AO75400 957 aaKnown RBP19.19■□□□□ 0.66
CLSTN3-214ENST00000542663 APBB3O95704 486 aa19.19■□□□□ 0.66
CLSTN3-214ENST00000542663 CAVIN2O95810 425 aa19.19■□□□□ 0.66
CLSTN3-214ENST00000542663 CSH1P0DML2 217 aa19.19■□□□□ 0.66
CLSTN3-214ENST00000542663 CSH2P0DML3 217 aa19.19■□□□□ 0.66
CLSTN3-214ENST00000542663 NOVA1P51513 510 aaKnown RBP19.19■□□□□ 0.66
CLSTN3-214ENST00000542663 MCM6Q14566 821 aa19.19■□□□□ 0.66
CLSTN3-214ENST00000542663 KARSQ15046 597 aaKnown RBP19.19■□□□□ 0.66
CLSTN3-214ENST00000542663 ELF2Q15723 593 aa19.19■□□□□ 0.66
CLSTN3-214ENST00000542663 SV2CQ496J9 727 aa19.19■□□□□ 0.66
CLSTN3-214ENST00000542663 MCTP1Q6DN14 999 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms