RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 C1QTNF1Q9BXJ1 281 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 EHD2Q9NZN4 543 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 TGM5O43548 720 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 MAGEA11P43364 429 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 KCNQ1P51787 676 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 NDST1P52848 882 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 RPL10AP62906 217 aaKnown RBP18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 ITIH3Q06033 890 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 HYAL1Q12794 435 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 LRMPQ12912 555 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 SLC39A12Q504Y0 691 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 PHLDB3Q6NSJ2 640 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 SARM1Q6SZW1 724 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 ELMOD1Q8N336 334 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 KREMEN2Q8NCW0 462 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 RNF214Q8ND24 703 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 CMASQ8NFW8 434 aaPredicted RBP18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 FAM122AQ96E09 287 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 TMEM176AQ96HP8 235 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 ELOVL4Q9GZR5 314 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 SFXN1Q9H9B4 322 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 FBXW11Q9UKB1 542 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 MYO6Q9UM54 1294 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 CNTN6Q9UQ52 1028 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 ASB3Q9Y575 518 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 HCFC2Q9Y5Z7 792 aa18.65■□□□□ 0.58
CLSTN3-210ENST00000540931 WDR27A2RRH5 827 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 PRRG1O14668 218 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 XYLBO75191 536 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 PDGFRBP09619 1106 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 UCHL3P15374 230 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 CD58P19256 250 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 ALDH1A3P47895 512 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 CDH8P55286 799 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 ARPP19P56211 112 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 KCNC3Q14003 757 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 SYCP1Q15431 976 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 CTC1Q2NKJ3 1217 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 PUS10Q3MIT2 529 aaKnown RBP18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 FIGNQ5HY92 759 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 ADGRD2Q7Z7M1 963 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 PALB2Q86YC2 1186 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 TMEM130Q8N3G9 435 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 RTP3Q9BQQ7 232 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 LSM14BQ9BX40 385 aaKnown RBP18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 STK33Q9BYT3 514 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 NUCKS1Q9H1E3 243 aaKnown RBP18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 IGFLR1Q9H665 355 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 FAM50BQ9Y247 325 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 PCDHB4Q9Y5E5 795 aa18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.64■□□□□ 0.57
CLSTN3-210ENST00000540931 TRIM66O15016 1216 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 PER2O15055 1255 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 MED7O43513 233 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 PAPLNO95428 1278 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 VDRP11473 427 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 RPL17P18621 184 aaKnown RBP18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 ADCY1Q08828 1119 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 KCNMA1Q12791 1236 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 TRIM14Q14142 442 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 MEA1Q16626 185 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 CES5AQ6NT32 575 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 TMEM270Q6UE05 265 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 CACNA2D4Q7Z3S7 1137 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 ITIH5Q86UX2 942 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 OSTM1Q86WC4 334 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 LEMD2Q8NC56 503 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 ZNF397Q8NF99 534 aaPredicted RBP18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 OR10T2Q8NGX3 314 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 HLA-CQ95604 372 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 SPAG5Q96R06 1193 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 DNAJC12Q9UKB3 198 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 SIK3Q9Y2K2 1263 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 TSC2P49815 1807 aa18.63■□□□□ 0.57
CLSTN3-210ENST00000540931 MTMR11A4FU01 709 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 ZMYND10O75800 440 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 CSPG5O95196 566 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 FGF19O95750 216 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 LRG1P02750 347 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 TPM1P09493 284 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 LMO2P25791 158 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 PTK2Q05397 1052 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 VEPH1Q14D04 833 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 SKIV2LQ15477 1246 aaKnown RBP18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 SGO2Q562F6 1265 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 PPM1LQ5SGD2 360 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 SCARA3Q6AZY7 606 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 RSPO2Q6UXX9 243 aaPredicted RBP18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 RRAGAQ7L523 313 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 GLYCTKQ8IVS8 523 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 SHC3Q92529 594 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 HEXIM2Q96MH2 286 aaKnown RBP18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 HNRNPABQ99729 332 aaKnown RBP18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 SDCBP2Q9H190 292 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 CYP4F11Q9HBI6 524 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 MAN1C1Q9NR34 630 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 CLDND1Q9NY35 253 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 IFNKQ9P0W0 207 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 CEP72Q9P209 647 aa18.62■□□□□ 0.57
CLSTN3-210ENST00000540931 GTF3C4Q9UKN8 822 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms