RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 DNAL1Q4LDG9 190 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 NET1Q7Z628 596 aaPredicted RBP13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 JDP2Q8WYK2 163 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 SKA1Q96BD8 255 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 FIZ1Q96SL8 496 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 DDX4Q9NQI0 724 aaKnown RBP13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 IQANK1A0A1B0GTG1 560 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 COPEO14579 308 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 ALOX15BO15296 676 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 PSTPIP1O43586 416 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 LIASO43766 372 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 STK10O94804 968 aaKnown RBP13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 GLRA2P23416 452 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 YY1P25490 414 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 NOVP48745 357 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 PEX3P56589 373 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 PTK7Q13308 1070 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 HIC1Q14526 733 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 KRT72Q14CN4 511 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 TRIP10Q15642 601 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 RAPH1Q70E73 1250 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 SATL1Q86VE3 508 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 FBXO36Q8NEA4 188 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 FBXO27Q8NI29 283 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 FAM84AQ96KN4 292 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 MRPL47Q9HD33 250 aaKnown RBP13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 SHMT1P34896 483 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 BASP1P80723 227 aaKnown RBP13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 SYCP2LQ5T4T6 812 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 HAUS6Q7Z4H7 955 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 CEP70Q8NHQ1 597 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 PLEKHO2Q8TD55 490 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 DNAJC1Q96KC8 554 aaKnown RBP13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 PANX3Q96QZ0 392 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 C10orf88Q9H8K7 445 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 CYP4F11Q9HBI6 524 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 ZNF232Q9UNY5 417 aa13.47□□□□□ -0.25
SFSWAP-209ENST00000540469 G3V3G9 751 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 ADRB2P07550 413 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 KLF1Q13351 362 aaPredicted RBP13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 GRAPQ13588 217 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 DCAF8Q5TAQ9 597 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 LPCAT4Q643R3 524 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 SEPT12Q8IYM1 358 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 PDIK1LQ8N165 341 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 GSTCDQ8NEC7 633 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 EXD1Q8NHP7 514 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 GRAPLQ8TC17 118 aaPredicted RBP13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 RSAD2Q8WXG1 361 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 WWP1Q9H0M0 922 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 DDX18Q9NVP1 670 aaKnown RBP13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 SLC7A8Q9UHI5 535 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 PHF24Q9UPV7 400 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 KAT6AQ92794 2004 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 SPATA31A5Q5VU36 1347 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 SPATA31A7Q8IWB4 1347 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 IGKV6D-41A0A0C4DH26 115 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 F8W8V4 182 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 GPSM2P81274 684 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 LSAMPQ13449 338 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 MYBPC3Q14896 1274 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 EFHC2Q5JST6 749 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 DCUN1D2Q6PH85 259 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 USP37Q86T82 979 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 HOMER2Q9NSB8 354 aa13.46□□□□□ -0.25
SFSWAP-209ENST00000540469 GNPATO15228 680 aa13.46□□□□□ -0.26
SFSWAP-209ENST00000540469 MAGEC1O60732 1142 aa13.46□□□□□ -0.26
SFSWAP-209ENST00000540469 OR6B1O95007 311 aa13.46□□□□□ -0.26
SFSWAP-209ENST00000540469 COG7P83436 770 aa13.46□□□□□ -0.26
SFSWAP-209ENST00000540469 GABPAQ06546 454 aa13.46□□□□□ -0.26
SFSWAP-209ENST00000540469 SHROOM1Q2M3G4 852 aaPredicted RBP13.46□□□□□ -0.26
SFSWAP-209ENST00000540469 C1QTNF12Q5T7M4 302 aa13.46□□□□□ -0.26
SFSWAP-209ENST00000540469 MFSD7Q6UXD7 560 aa13.46□□□□□ -0.26
SFSWAP-209ENST00000540469 NLRX1Q86UT6 975 aa13.46□□□□□ -0.26
SFSWAP-209ENST00000540469 SNRNP27Q8WVK2 155 aaKnown RBP13.46□□□□□ -0.26
SFSWAP-209ENST00000540469 TEKT3Q9BXF9 490 aa13.46□□□□□ -0.26
SFSWAP-209ENST00000540469 SLC13A1Q9BZW2 595 aa13.46□□□□□ -0.26
SFSWAP-209ENST00000540469 TAGLN3Q9UI15 199 aa13.46□□□□□ -0.26
SFSWAP-209ENST00000540469 SHOC2Q9UQ13 582 aa13.46□□□□□ -0.26
SFSWAP-209ENST00000540469 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 TM7SF2O76062 418 aa13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 HNRNPCP07910 306 aaKnown RBP eCLIP13.45□□□□□ -0.263e-8■□□□□ 8.6
SFSWAP-209ENST00000540469 DLDP09622 509 aaKnown RBP13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 SPATA31D3P0C874 917 aa13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 GAD2Q05329 585 aa13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 WDR44Q5JSH3 913 aa13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 RABGAP1LQ5R372 815 aa13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 SPATA31D4Q6ZUB0 917 aa13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 ACAD11Q709F0 780 aa13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 MIER3Q7Z3K6 550 aa13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 LINC00116Q8NCU8 138 aa13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 DCAF4Q8WV16 495 aa13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 WDR18Q9BV38 432 aa13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 SHCBP1LQ9BZQ2 653 aa13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 WRAP73Q9P2S5 460 aaPredicted RBP13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 RABGEF1Q9UJ41 708 aa13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 IPO5O00410 1097 aaKnown RBP13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 DNAJC6O75061 913 aa13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 AQP5P55064 265 aa13.45□□□□□ -0.26
SFSWAP-209ENST00000540469 GPX6P59796 221 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms