RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 BRSK2Q8IWQ3 736 aa12.09□□□□□ -0.47
CLSTN3-206ENST00000535668 EFCAB13Q8IY85 973 aa12.09□□□□□ -0.47
CLSTN3-206ENST00000535668 KRI1Q8N9T8 703 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-206ENST00000535668 CCDC26Q8TAB7 109 aa12.09□□□□□ -0.47
CLSTN3-206ENST00000535668 GAB3Q8WWW8 586 aa12.09□□□□□ -0.47
CLSTN3-206ENST00000535668 USP13Q92995 863 aaPredicted RBP12.09□□□□□ -0.47
CLSTN3-206ENST00000535668 ZNF560Q96MR9 790 aa12.09□□□□□ -0.47
CLSTN3-206ENST00000535668 PLIN2Q99541 437 aa12.09□□□□□ -0.47
CLSTN3-206ENST00000535668 DUSP9Q99956 384 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-206ENST00000535668 C2orf42Q9NWW7 574 aa12.09□□□□□ -0.47
CLSTN3-206ENST00000535668 UXTQ9UBK9 157 aaPredicted RBP12.09□□□□□ -0.47
CLSTN3-206ENST00000535668 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.09□□□□□ -0.47
CLSTN3-206ENST00000535668 PCDHB5Q9Y5E4 795 aa12.09□□□□□ -0.47
CLSTN3-206ENST00000535668 SRPRBQ9Y5M8 271 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-206ENST00000535668 CFAP47Q6ZTR5 3102 aa12.09□□□□□ -0.47
CLSTN3-206ENST00000535668 ZFHX4Q86UP3 3567 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 OTOL1A6NHN0 477 aaPredicted RBP12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 H3BQV1 296 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 EPN2O95208 641 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 MATR3P43243 847 aaKnown RBP eCLIP12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 SOX9P48436 509 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 FNTBP49356 437 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 ACOT2P49753 483 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 RPL10AP62906 217 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 GRIN1Q05586 938 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 DMWDQ09019 674 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 CUL4AQ13619 759 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 KARSQ15046 597 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 ZRSR1Q15695 479 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 ZC2HC1CQ53FD0 456 aaPredicted RBP12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 L1TD1Q5T7N2 865 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 LARP1BQ659C4 914 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 FSTL4Q6MZW2 842 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 CNNM4Q6P4Q7 775 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 CACNA2D4Q7Z3S7 1137 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 FAM160A2Q8N612 972 aaPredicted RBP12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 TOP6BLQ8N6T0 577 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 EXOC4Q96A65 974 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 GCNAQ96QF7 691 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 LPIN3Q9BQK8 851 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 GKN1Q9NS71 199 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 RBM12Q9NTZ6 932 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 ITGA11Q9UKX5 1188 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 USP18Q9UMW8 372 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 EXOC7Q9UPT5 735 aa12.08□□□□□ -0.48
CLSTN3-206ENST00000535668 A0A0A0MRY4 1105 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 OBSL1O75147 1896 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 TADA3O75528 432 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 CD2BP2O95400 341 aaKnown RBP12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 LAMA1P25391 3075 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 AVPR1AP37288 418 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 LHX1P48742 406 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 TSPY1Q01534 308 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 FAM160A1Q05DH4 1040 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 TNK2Q07912 1038 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 GRSF1Q12849 480 aaKnown RBP eCLIP12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 PON2Q15165 354 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 SF3A1Q15459 793 aaKnown RBP12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 MGAT5BQ3V5L5 792 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 VSTM1Q6UX27 236 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 SYT13Q7L8C5 426 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 PDCL2Q8N4E4 241 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 C1orf127Q8N9H9 656 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 CACTINQ8WUQ7 758 aaKnown RBP12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 ZFYVE19Q96K21 471 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 SPATA17Q96L03 361 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 CNTNAP3BQ96NU0 1288 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 SEPT5Q99719 369 aaPredicted RBP12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 PYM1Q9BRP8 204 aaKnown RBP12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 CNTNAP3Q9BZ76 1288 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 GCNT4Q9P109 453 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 FBXO2Q9UK22 296 aaPredicted RBP12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 PCDHB13Q9Y5F0 798 aa12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.07□□□□□ -0.48
CLSTN3-206ENST00000535668 IGF2RP11717 2491 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 TISP43B9A030 160 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 EXTL3O43909 919 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 SOAT2O75908 522 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 PDCP20941 246 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 USP4Q13107 963 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 ZNF77Q15935 545 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 INTS6LQ5JSJ4 861 aaKnown RBP12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 FAM200AQ8TCP9 573 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 TMEM174Q8WUU8 243 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 OSCP1Q8WVF1 389 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 POMGNT1Q8WZA1 660 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 MRPS31Q92665 395 aaKnown RBP12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 ACCSQ96QU6 501 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 TTLL2Q9BWV7 592 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 TMLHEQ9NVH6 421 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 CCDC39Q9UFE4 941 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 L1RE1Q9UN81 338 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 SMC3Q9UQE7 1217 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 CCL26Q9Y258 94 aa12.06□□□□□ -0.48
CLSTN3-206ENST00000535668 ZFYVE26Q68DK2 2539 aa12.05□□□□□ -0.48
CLSTN3-206ENST00000535668 DCDC2BA2VCK2 349 aa12.05□□□□□ -0.48
CLSTN3-206ENST00000535668 MYMKA6NI61 221 aa12.05□□□□□ -0.48
CLSTN3-206ENST00000535668 RPP40O75818 363 aaKnown RBP12.05□□□□□ -0.48
CLSTN3-206ENST00000535668 OLFM2O95897 454 aa12.05□□□□□ -0.48
CLSTN3-206ENST00000535668 KRT18P05783 430 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms