RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 TAF12Q16514 161 aa16.99■□□□□ 0.31
CHMP4A-207ENST00000533523 C9orf57Q5W0N0 161 aa16.99■□□□□ 0.31
CHMP4A-207ENST00000533523 BPIFB1Q8TDL5 484 aa16.99■□□□□ 0.31
CHMP4A-207ENST00000533523 LARP4BQ92615 738 aaKnown RBP16.99■□□□□ 0.31
CHMP4A-207ENST00000533523 SMG9Q9H0W8 520 aaKnown RBP16.99■□□□□ 0.31
CHMP4A-207ENST00000533523 ZHX3Q9H4I2 956 aa16.99■□□□□ 0.31
CHMP4A-207ENST00000533523 RXFP3Q9NSD7 469 aa16.99■□□□□ 0.31
CHMP4A-207ENST00000533523 OBP2AQ9NY56 170 aa16.99■□□□□ 0.31
CHMP4A-207ENST00000533523 STK17AQ9UEE5 414 aa16.99■□□□□ 0.31
CHMP4A-207ENST00000533523 ANAPC1Q9H1A4 1944 aa16.99■□□□□ 0.31
CHMP4A-207ENST00000533523 SPTLC2O15270 562 aa16.98■□□□□ 0.31
CHMP4A-207ENST00000533523 TBCAO75347 108 aaKnown RBP16.98■□□□□ 0.31
CHMP4A-207ENST00000533523 ATF6P18850 670 aa16.98■□□□□ 0.31
CHMP4A-207ENST00000533523 SCP2P22307 547 aa16.98■□□□□ 0.31
CHMP4A-207ENST00000533523 CCINQ13939 588 aa16.98■□□□□ 0.31
CHMP4A-207ENST00000533523 NFKBIBQ15653 356 aa16.98■□□□□ 0.31
CHMP4A-207ENST00000533523 CSRP2Q16527 193 aa16.98■□□□□ 0.31
CHMP4A-207ENST00000533523 ITPRIPL2Q3MIP1 535 aa16.98■□□□□ 0.31
CHMP4A-207ENST00000533523 FAM160A2Q8N612 972 aaPredicted RBP16.98■□□□□ 0.31
CHMP4A-207ENST00000533523 GIPC2Q8TF65 315 aa16.98■□□□□ 0.31
CHMP4A-207ENST00000533523 TSPAN18Q96SJ8 248 aa16.98■□□□□ 0.31
CHMP4A-207ENST00000533523 PYM1Q9BRP8 204 aaKnown RBP16.98■□□□□ 0.31
CHMP4A-207ENST00000533523 TASP1Q9H6P5 420 aa16.98■□□□□ 0.31
CHMP4A-207ENST00000533523 PARVGQ9HBI0 331 aa16.98■□□□□ 0.31
CHMP4A-207ENST00000533523 BLOC1S4Q9NUP1 217 aa16.98■□□□□ 0.31
CHMP4A-207ENST00000533523 NUP205Q92621 2012 aa16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 A0A0B4J269 797 aa16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 TM4SF5O14894 197 aa16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 PRPF40AO75400 957 aaKnown RBP16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 CYP11A1P05108 521 aa16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 TUFMP49411 452 aaKnown RBP16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 MCM6Q14566 821 aa16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 AASDHQ4L235 1098 aaPredicted RBP16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 SLC39A4Q6P5W5 647 aa16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 CCDC73Q6ZRK6 1079 aa16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 WDR5BQ86VZ2 330 aa16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 METTL23Q86XA0 190 aa16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 CD302Q8IX05 232 aa16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 EPSTI1Q96J88 318 aa16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 CLIC6Q96NY7 704 aa16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 ZCWPW1Q9H0M4 648 aa16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 LMBRD1Q9NUN5 540 aa16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 THG1LQ9NWX6 298 aaKnown RBP16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 ABI2Q9NYB9 513 aaPredicted RBP16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 HSFX1Q9UBD0 423 aa16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 CPSF3Q9UKF6 684 aaKnown RBP16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 DSEQ9UL01 958 aa16.97■□□□□ 0.31
CHMP4A-207ENST00000533523 BPTFQ12830 3046 aa16.96■□□□□ 0.31
CHMP4A-207ENST00000533523 EXTL3O43909 919 aa16.96■□□□□ 0.31
CHMP4A-207ENST00000533523 PPP6R2O75170 966 aa16.96■□□□□ 0.31
CHMP4A-207ENST00000533523 ADRB2P07550 413 aa16.96■□□□□ 0.31
CHMP4A-207ENST00000533523 PAX3P23760 479 aa16.96■□□□□ 0.31
CHMP4A-207ENST00000533523 ABCD1P33897 745 aa16.96■□□□□ 0.31
CHMP4A-207ENST00000533523 ME1P48163 572 aa16.96■□□□□ 0.31
CHMP4A-207ENST00000533523 ACOT2P49753 483 aa16.96■□□□□ 0.31
CHMP4A-207ENST00000533523 TAF6P49848 677 aa16.96■□□□□ 0.31
CHMP4A-207ENST00000533523 N4BP2L1Q5TBK1 243 aaPredicted RBP16.96■□□□□ 0.31
CHMP4A-207ENST00000533523 RRAGBQ5VZM2 374 aa16.96■□□□□ 0.31
CHMP4A-207ENST00000533523 LRRC15Q8TF66 581 aa16.96■□□□□ 0.31
CHMP4A-207ENST00000533523 KCNN1Q92952 543 aa16.96■□□□□ 0.31
CHMP4A-207ENST00000533523 IL21Q9HBE4 155 aa16.96■□□□□ 0.31
CHMP4A-207ENST00000533523 DERAQ9Y315 318 aa16.96■□□□□ 0.31
CHMP4A-207ENST00000533523 ANO9A1A5B4 782 aa16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 TISP43B9A030 160 aa16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 TULP1O00294 542 aaPredicted RBP16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 PIRO00625 290 aa16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 CYB561D2O14569 222 aa16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 TRAK2O60296 914 aa16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 GADD45BO75293 160 aaPredicted RBP16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 NMT1P30419 496 aaKnown RBP16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 AVPR1AP37288 418 aa16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 PXNP49023 591 aaPredicted RBP16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 ZNF131P52739 623 aa16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 CCDC6Q16204 474 aa16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 ADALQ6DHV7 355 aa16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 PKN3Q6P5Z2 889 aa16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 USP49Q70CQ1 688 aa16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 THEM5Q8N1Q8 247 aa16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 SYNPOQ8N3V7 929 aa16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 STKLD1Q8NE28 680 aa16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 SPPL2BQ8TCT7 592 aa16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 IGSF10Q6WRI0 2623 aa16.95■□□□□ 0.3
CHMP4A-207ENST00000533523 ANKRD63C9JTQ0 380 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 AXIN1O15169 862 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 FOXD2O60548 495 aaPredicted RBP16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 CCDC192P0DO97 292 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 HAPLN1P10915 354 aaPredicted RBP16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 WEE1P30291 646 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 GRSF1Q12849 480 aaKnown RBP eCLIP16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 BFSP1Q12934 665 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 SF3A2Q15428 464 aaKnown RBP16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 WSCD1Q658N2 575 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 TRIM68Q6AZZ1 485 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 IL31Q6EBC2 164 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 CMTM8Q8IZV2 173 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 MAB21L3Q8N8X9 362 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 C12orf50Q8NA57 414 aaPredicted RBP16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 C2orf15Q8WU43 125 aaKnown RBP16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 SLC46A2Q9BY10 475 aa16.94■□□□□ 0.3
CHMP4A-207ENST00000533523 GKN1Q9NS71 199 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms