RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 MICAL2O94851 1124 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 EPB41P11171 864 aaKnown RBP10.89□□□□□ -0.67
VPS28-204ENST00000526054 MYL4P12829 197 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 KRT13P13646 458 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 CD44P16070 742 aaKnown RBP10.89□□□□□ -0.67
VPS28-204ENST00000526054 TNNI1P19237 187 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 PSMC2P35998 433 aaKnown RBP10.89□□□□□ -0.67
VPS28-204ENST00000526054 PNPLA4P41247 253 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 CCR2P41597 374 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 CASP4P49662 377 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 GUCY2FP51841 1108 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 WNT7BP56706 349 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 CSTF1Q05048 431 aaKnown RBP10.89□□□□□ -0.67
VPS28-204ENST00000526054 DUOXA2Q1HG44 320 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 C9orf57Q5W0N0 161 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 ANKRD40Q6AI12 368 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 FOXR2Q6PJQ5 311 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 POTEHQ6S545 545 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 RNF19BQ6ZMZ0 732 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 INTS8Q75QN2 995 aaKnown RBP10.89□□□□□ -0.67
VPS28-204ENST00000526054 FAM186BQ8IYM0 893 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 MLKLQ8NB16 471 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 SMARCD2Q92925 531 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 ZNF512Q96ME7 567 aaPredicted RBP10.89□□□□□ -0.67
VPS28-204ENST00000526054 NELL2Q99435 816 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 MKNK1Q9BUB5 465 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 TRMT61BQ9BVS5 477 aaKnown RBP10.89□□□□□ -0.67
VPS28-204ENST00000526054 MTMR12Q9C0I1 747 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 SLITRK6Q9H5Y7 841 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 INTS13Q9NVM9 706 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 CEP72Q9P209 647 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 ITGA11Q9UKX5 1188 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 MAFFQ9ULX9 164 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 YIPF1Q9Y548 306 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 PCDHGA2Q9Y5H1 932 aa10.89□□□□□ -0.67
VPS28-204ENST00000526054 M0QZQ0 153 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 PIRO00625 290 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 SLC16A3O15427 465 aaKnown RBP10.88□□□□□ -0.67
VPS28-204ENST00000526054 AKAP3O75969 853 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 KRT19P08727 400 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 OR4Q2P0C623 313 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 GJA1P17302 382 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 PSMC3P17980 439 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 POLR2BP30876 1174 aaKnown RBP10.88□□□□□ -0.67
VPS28-204ENST00000526054 RPS9P46781 194 aaKnown RBP10.88□□□□□ -0.67
VPS28-204ENST00000526054 TAF6P49848 677 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 AP3M2P53677 418 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 NLRP12P59046 1061 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 RBP5P82980 135 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 ENPEPQ07075 957 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 PLD1Q13393 1074 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 SV2CQ496J9 727 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 LMBRD2Q68DH5 695 aaPredicted RBP10.88□□□□□ -0.67
VPS28-204ENST00000526054 VITQ6UXI7 678 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 DSTYKQ6XUX3 929 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 RBM43Q6ZSC3 357 aaKnown RBP10.88□□□□□ -0.67
VPS28-204ENST00000526054 ZC3H3Q8IXZ2 948 aaKnown RBP10.88□□□□□ -0.67
VPS28-204ENST00000526054 HS6ST3Q8IZP7 471 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 TMEM130Q8N3G9 435 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 SUMF1Q8NBK3 374 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 ZSCAN18Q8TBC5 510 aaPredicted RBP10.88□□□□□ -0.67
VPS28-204ENST00000526054 TMC2Q8TDI7 906 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 NUP210Q8TEM1 1887 aaPredicted RBP10.88□□□□□ -0.67
VPS28-204ENST00000526054 DEPDC1BQ8WUY9 529 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 ATRIPQ8WXE1 791 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 IRF7Q92985 503 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 CLDN23Q96B33 292 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 RMDN1Q96DB5 314 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 CEP63Q96MT8 703 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 PGLYRP2Q96PD5 576 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 OXCT2Q9BYC2 517 aaPredicted RBP10.88□□□□□ -0.67
VPS28-204ENST00000526054 NCDNQ9UBB6 729 aa10.88□□□□□ -0.67
VPS28-204ENST00000526054 NDRG2Q9UN36 371 aaKnown RBP10.88□□□□□ -0.67
VPS28-204ENST00000526054 TIMM13Q9Y5L4 95 aaPredicted RBP10.88□□□□□ -0.67
VPS28-204ENST00000526054 PTPRJQ12913 1337 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 GPR179Q6PRD1 2367 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 ANO9A1A5B4 782 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 LRRIQ3A6PVS8 624 aaPredicted RBP10.87□□□□□ -0.67
VPS28-204ENST00000526054 MAN2B1O00754 1011 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 NRG2O14511 850 aaPredicted RBP10.87□□□□□ -0.67
VPS28-204ENST00000526054 MOSPD3O75425 235 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 OAZ2O95190 189 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 FGFR1OPO95684 399 aaKnown RBP10.87□□□□□ -0.67
VPS28-204ENST00000526054 ITGB3P05106 788 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 GDI1P31150 447 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 AARSP49588 968 aaKnown RBP eCLIP10.87□□□□□ -0.671e-6■■■■■ 36.1
VPS28-204ENST00000526054 VAMP7P51809 220 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 PMS1P54277 932 aaKnown RBP10.87□□□□□ -0.67
VPS28-204ENST00000526054 EPHA5P54756 1037 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 STX17P56962 302 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 BFSP1Q12934 665 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 BIRC3Q13489 604 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 TEAD2Q15562 447 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 KLHL40Q2TBA0 621 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 TTI2Q6NXR4 508 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 CAVIN1Q6NZI2 390 aaKnown RBP10.87□□□□□ -0.67
VPS28-204ENST00000526054 TSSK4Q6SA08 328 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 SASS6Q6UVJ0 657 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 DCLK2Q8N568 766 aa10.87□□□□□ -0.67
VPS28-204ENST00000526054 CSGALNACT2Q8N6G5 542 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms